Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 2239.9 1119 100.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 2184.8 1118 97.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 2120.1 1186 90.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 2038.1 1116 91.2
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1837.4 1124 80.2
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1835.5 1116 80.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1833.2 1123 80.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1829.3 1131 79.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1826.6 1122 80.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1825.8 1123 80.1
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1123 80.0
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1822.8 1123 80.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1822.4 1123 80.2
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1822.0 1121 80.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1818.9 1122 79.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1814.7 1122 79.4
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1814.3 1121 79.9
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1813.1 1123 79.4
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1811.6 1123 79.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1811.2 1124 79.4
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1810.8 1125 78.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1806.6 1123 79.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1123 79.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1802.7 1095 80.5
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1800.8 1126 79.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1793.9 1125 79.1
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1123 79.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1793.1 1122 79.1
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1123 79.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1790.4 1122 78.3
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1788.9 1126 78.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1125 78.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1780.4 1137 77.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1780.0 1124 78.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1775.0 1117 78.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1774.6 1136 77.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1772.7 1127 77.7
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1770.4 1127 77.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1125 78.0
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1124 79.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1769.6 1121 78.7
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1769.6 1123 78.0
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1123 78.1
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1763.0 1125 77.9
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1762.7 1127 77.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1760.3 1118 77.6
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1753.0 1124 77.7
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1751.1 1123 77.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1748.0 1149 75.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1748.0 1183 74.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1746.9 1133 77.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1743.8 1077 79.8
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1743.4 1124 76.0
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1741.9 1123 77.4
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1734.5 1124 77.3
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1731.8 1125 76.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1730.7 1128 76.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1724.5 1121 75.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1723.4 1162 74.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1713.4 1196 72.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1708.0 1117 76.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1707.6 1123 74.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1704.5 1113 76.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1701.0 1034 80.2
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1696.4 1120 75.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1693.3 1122 74.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1690.6 1079 77.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1681.4 1124 74.7
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1677.5 1120 74.2
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1674.4 1124 73.0
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1669.4 1121 73.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1664.0 1122 73.3
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1662.5 1249 68.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1647.1 1121 72.6
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1646.7 1121 72.7
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1643.6 1123 73.9
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1641.3 1117 73.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1637.1 1320 65.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1619.4 1119 72.1
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1617.4 1119 72.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1613.6 1123 71.7
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1612.4 1154 71.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1607.0 1120 71.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1606.3 1120 71.6
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1567.7 1144 68.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1562.4 1164 69.2
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1554.3 959 80.5
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1549.3 1152 68.1
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1512.3 1122 71.7
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1500.3 1117 68.2
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1496.9 1127 67.3
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1488.8 1124 66.5
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1488.0 1161 67.0
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1479.9 1105 68.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1479.5 1124 65.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1415.2 867 79.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1397.1 980 73.8
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1393.3 832 82.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1388.2 828 82.6
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1352.4 859 76.6
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1216.1 824 71.2
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1208.0 782 75.2
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1143.6 685 82.8
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1099.7 1144 50.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 3.1e-311 1072.0 1119 51.0
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.1e-298 1028.1 1520 41.9
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.4e-292 1009.2 1143 48.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.1e-280 969.5 1146 45.0
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.7e-259 898.7 677 65.4
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.7e-256 889.0 528 85.2
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 8.2e-256 887.9 1378 37.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 5.3e-255 885.2 673 67.3
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 8.8e-250 867.8 736 60.7
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.1e-247 859.0 584 76.0
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 9.2e-207 724.9 617 62.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.5e-198 696.4 434 81.6
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 7.1e-191 672.2 451 70.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.1e-183 648.3 436 70.9
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.6e-177 627.1 591 52.8
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.5e-143 514.2 451 59.0
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 7.2e-135 486.1 296 78.0
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.8e-131 474.2 377 70.0
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.3e-117 427.9 347 68.0
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.7e-107 394.0 1091 29.1
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 9.2e-90 336.3 768 32.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.1e-78 298.5 312 52.6
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 8.1e-78 296.6 188 75.0
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 2.6e-76 291.6 1453 22.0
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.2e-73 282.7 192 68.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.6e-70 272.3 228 66.7
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.1e-66 259.6 198 72.7
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.9e-63 248.8 206 60.2
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.9e-63 248.8 178 66.9
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.0e-61 241.1 294 46.6
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.2e-60 239.6 316 40.2
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.6e-57 227.6 212 57.1
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.5e-50 204.1 593 31.7
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 6.3e-46 190.7 255 42.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.4e-45 188.7 212 56.1
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.5e-42 178.7 329 40.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 7.2e-42 177.2 212 51.9
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.5e-36 159.5 712 23.5
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.6e-36 158.7 189 46.0
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.4e-36 158.3 183 53.6
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 3.4e-28 131.7 85 78.8
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.5e-28 131.3 85 65.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-26 126.7 88 76.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.5e-26 125.6 164 47.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 5.7e-23 114.4 65 78.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.2e-22 112.5 82 72.0
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 7.0e-21 107.5 74 68.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-20 106.3 138 48.6
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 2.0e-20 105.9 161 39.1
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.5e-18 99.0 67 65.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.6e-17 96.3 60 73.3
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.0e-16 92.0 69 63.8
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 6.7e-16 90.9 95 52.6
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-15 90.1 64 68.8
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-14 86.7 80 57.5
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.6e-12 79.7 56 69.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-12 79.7 45 80.0
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-11 76.3 59 67.8
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.1e-10 73.6 49 69.4
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 4.2e-10 71.6 56 55.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.6e-09 68.6 43 69.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.8e-08 63.9 71 49.3
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 8.8e-08 63.9 34 73.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.7e-06 59.7 41 61.0
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.8e-06 58.2 49 63.3


User provided reference genes

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