Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 4.1e-85 318.2 177 100.0
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 8.9e-72 273.9 172 89.0
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 1.2e-52 210.3 147 81.6
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 8.1e-49 197.6 221 58.8
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 5.1e-19 98.6 146 42.5
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.5e-18 97.1 142 49.3
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 1.9e-18 96.7 152 42.8
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 3.3e-18 95.9 139 48.2
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 5.7e-18 95.1 137 38.0
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 7.4e-18 94.7 142 44.4
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.3e-17 94.0 181 42.5
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.6e-17 93.6 143 46.9
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 2.1e-17 93.2 97 50.5
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.7e-17 92.4 143 39.2
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.4e-16 89.7 145 40.0
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.1e-16 89.4 143 44.1
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.1e-16 89.4 143 44.1
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.1e-16 89.0 141 44.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 5.3e-16 88.6 140 38.6
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.3e-16 88.6 147 42.2
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 6.9e-16 88.2 141 44.0
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 9.0e-16 87.8 147 46.3
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 9.0e-16 87.8 140 44.3
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 4.5e-15 85.5 124 39.5
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 7.6e-15 84.7 124 40.3
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.3e-14 84.0 142 39.4
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.3e-14 84.0 143 41.3
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.7e-14 83.6 146 40.4
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 2.9e-14 82.8 141 41.8
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.9e-14 82.8 143 41.3
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.9e-14 82.8 151 39.1
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 2.9e-14 82.8 148 47.3
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.8e-14 82.4 142 40.1
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 5.0e-14 82.0 132 37.9
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 6.5e-14 81.6 145 46.2
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 8.4e-14 81.3 143 36.4
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 8.4e-14 81.3 154 42.2
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 8.4e-14 81.3 104 51.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.1e-13 80.9 135 40.7
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.1e-13 80.9 143 37.1
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-13 80.9 151 44.4
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-13 80.9 151 44.4
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.9e-13 80.1 154 37.0
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 5.5e-13 78.6 140 35.7
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 7.2e-13 78.2 151 42.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 9.3e-13 77.8 100 40.0
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 9.3e-13 77.8 145 37.2
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 9.3e-13 77.8 144 38.9
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.2e-12 77.4 145 45.5
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 1.2e-12 77.4 140 36.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.2e-12 77.4 145 44.1
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.6e-12 77.0 152 36.8
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.6e-12 77.0 138 45.7
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.1e-12 76.6 145 39.3
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.7e-12 76.3 144 45.8
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.7e-12 76.3 156 35.9
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 3.5e-12 75.9 90 43.3
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.6e-12 75.5 146 35.6
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 4.6e-12 75.5 143 35.0
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 7.9e-12 74.7 162 36.4
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 7.9e-12 74.7 94 43.6
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.0e-11 74.3 121 39.7
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.0e-11 74.3 140 33.6
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.0e-11 74.3 107 49.5
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.3e-11 73.9 124 45.2
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.3e-11 73.9 124 45.2
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.8e-11 73.6 147 36.1
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.8e-11 73.6 168 35.7
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.8e-11 73.6 125 47.2
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 2.3e-11 73.2 147 36.1
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.3e-11 73.2 132 41.7
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.3e-11 73.2 149 38.3
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.3e-11 73.2 139 41.0
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.3e-11 73.2 142 43.0
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 3.0e-11 72.8 145 40.0
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 3.0e-11 72.8 138 40.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 3.9e-11 72.4 144 38.9
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 3.9e-11 72.4 121 46.3
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 6.7e-11 71.6 145 36.6
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 8.7e-11 71.2 94 42.6
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 1.5e-10 70.5 134 47.8
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 2.5e-10 69.7 145 41.4
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.3e-10 69.3 140 40.7
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.3e-10 68.9 103 44.7
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 4.3e-10 68.9 141 35.5
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 5.7e-10 68.6 124 43.5
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.7e-10 68.6 162 39.5
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 5.7e-10 68.6 139 39.6
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 7.4e-10 68.2 132 38.6
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 7.4e-10 68.2 157 35.0
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.3e-09 67.4 140 35.7
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.3e-09 67.4 102 41.2
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.6e-09 67.0 137 39.4
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 2.2e-09 66.6 109 38.5
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 3.7e-09 65.9 116 37.9
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.8e-09 65.5 137 31.4
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 6.3e-09 65.1 45 66.7
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 6.3e-09 65.1 143 41.3
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 6.3e-09 65.1 141 34.8
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 8.2e-09 64.7 90 41.1
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.1e-08 64.3 77 46.8
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.4e-08 63.9 93 37.6
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.4e-08 63.9 140 30.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.4e-08 63.9 59 54.2
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.4e-08 63.2 90 41.1
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 3.1e-08 62.8 143 35.7
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 3.1e-08 62.8 152 33.6
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 4.1e-08 62.4 133 33.1
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 4.1e-08 62.4 137 35.0
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 6.9e-08 61.6 94 42.6
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 1.2e-07 60.8 93 41.9
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 1.2e-07 60.8 88 44.3
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.6e-07 59.7 59 52.5
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.6e-07 59.7 79 43.0
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 2.6e-07 59.7 136 32.4
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 7.7e-07 58.2 94 40.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 7.7e-07 58.2 135 31.9
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 1.0e-06 57.8 92 33.7
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 1.0e-06 57.8 99 36.4
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.3e-06 57.4 90 42.2
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 2.2e-06 56.6 124 35.5
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 2.9e-06 56.2 142 38.0
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 5.0e-06 55.5 93 38.7
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 6.5e-06 55.1 95 40.0


User provided reference genes

Program Settings