Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 9.2e-134 480.3 260 100.0
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 1.0e-124 450.3 251 97.2
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 9.5e-123 443.7 260 93.1
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 9.9e-104 380.6 255 84.7
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.0e-84 315.8 265 68.3
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 3.9e-84 315.5 265 68.7
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 2.1e-77 293.1 258 65.1
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 5.1e-76 288.5 251 64.1
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 5.1e-76 288.5 243 63.8
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 6.7e-76 288.1 264 63.3
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.9e-75 286.6 268 63.4
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.3e-74 283.9 259 61.4
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 5.3e-73 278.5 255 63.1
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.9e-73 278.1 273 60.1
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 6.9e-73 278.1 273 62.6
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 9.0e-73 277.7 248 64.5
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.2e-72 277.3 249 63.9
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 2.0e-72 276.6 255 63.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.4e-72 275.8 232 66.8
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.5e-72 275.4 255 63.5
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 5.9e-72 275.0 244 65.2
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 7.6e-72 274.6 248 64.1
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.3e-71 273.9 255 63.1
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 1.7e-71 273.5 276 61.2
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 3.8e-71 272.3 230 67.8
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 8.5e-71 271.2 231 67.1
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.1e-70 270.8 268 62.7
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 1.4e-70 270.4 262 59.9
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 2.5e-70 269.6 249 62.7
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.2e-70 269.2 264 62.1
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 3.2e-70 269.2 250 62.0
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 9.3e-70 267.7 265 61.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.1e-69 266.5 248 62.1
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 3.6e-69 265.8 234 65.0
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 3.6e-69 265.8 258 59.3
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 6.1e-69 265.0 258 59.3
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.3e-68 263.8 323 53.6
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 6.7e-68 261.5 258 60.9
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 6.7e-68 261.5 290 56.9
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 8.7e-68 261.2 257 58.4
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.1e-67 260.8 253 61.3
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 1.1e-67 260.8 292 56.2
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.5e-67 260.4 292 56.2
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 1.9e-67 260.0 259 60.2
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 3.3e-67 259.2 241 62.2
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.3e-66 257.3 236 63.6
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.3e-66 257.3 343 51.3
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.7e-66 256.9 267 59.2
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.8e-66 256.1 236 64.0
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.8e-66 256.1 256 59.0
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 2.8e-66 256.1 264 59.5
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 3.7e-66 255.8 224 64.3
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 2.4e-65 253.1 252 60.7
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 9.1e-65 251.1 267 58.8
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 9.1e-65 251.1 222 63.5
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 5.9e-64 248.4 303 52.8
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 7.7e-64 248.1 267 55.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.0e-63 247.7 194 72.7
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.0e-63 247.7 255 56.1
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.7e-63 246.9 253 58.9
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 2.2e-63 246.5 251 59.4
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.4e-62 243.8 266 56.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.9e-62 243.4 222 62.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 1.2e-61 240.7 240 59.6
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 4.6e-61 238.8 234 60.3
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.0e-60 237.7 269 54.6
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 1.0e-60 237.7 230 59.6
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 1.8e-60 236.9 221 62.4
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.8e-60 236.9 266 56.4
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.3e-60 236.5 214 64.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.5e-59 233.8 232 59.1
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 7.4e-59 231.5 267 55.4
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 1.3e-58 230.7 212 63.2
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.8e-58 229.6 225 58.2
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 3.7e-58 229.2 256 53.9
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 4.8e-58 228.8 233 59.2
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 6.3e-58 228.4 242 54.1
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 6.3e-58 228.4 237 56.5
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 6.9e-57 224.9 233 58.8
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.6e-56 223.0 240 55.8
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.6e-56 223.0 240 55.8
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 3.4e-56 222.6 266 54.5
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 4.5e-56 222.2 241 53.9
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 4.5e-56 222.2 240 55.0
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 5.9e-56 221.9 224 61.2
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.3e-55 220.7 247 53.8
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.3e-55 220.7 241 55.2
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.3e-55 220.7 241 55.2
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.3e-55 220.7 232 57.3
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 1.3e-55 220.7 241 54.4
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.7e-55 220.3 240 54.6
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 5.0e-55 218.8 263 52.5
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 8.5e-55 218.0 240 54.6
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 1.4e-54 217.2 229 57.6
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 3.2e-54 216.1 235 54.0
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 4.2e-54 215.7 230 55.2
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 7.2e-54 214.9 236 54.2
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.6e-53 213.8 236 53.4
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 2.1e-53 213.4 251 54.6
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 2.1e-53 213.4 242 55.4
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 3.6e-53 212.6 234 54.3
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.0e-52 211.1 241 51.9
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 2.3e-52 209.9 251 51.4
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 6.7e-52 208.4 233 53.6
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 2.6e-51 206.5 239 51.5
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 3.7e-50 202.6 251 50.2
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.6e-48 197.2 263 48.7
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-44 184.1 251 49.0
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.2e-44 182.2 247 48.2
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.2e-44 182.2 247 48.6
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.2e-42 176.8 122 73.8
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 2.2e-39 166.8 241 44.0
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 8.3e-34 148.3 164 58.5
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 2.4e-33 146.7 286 38.8
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 5.4e-33 145.6 123 67.5
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 1.8e-28 130.6 155 48.4
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 8.9e-28 128.3 126 59.5
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.8e-25 120.6 268 34.3
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 1.0e-23 114.8 230 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.3e-22 109.8 118 52.5
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 5.6e-22 109.0 280 33.2
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.3e-15 87.8 207 38.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 2.8e-13 80.1 149 38.3
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 5.8e-11 72.4 128 39.1
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 4.1e-09 66.2 131 39.7
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 6.6e-07 58.9 230 27.4
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.5e-06 57.0 84 44.0


User provided reference genes

Program Settings