Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 2.4e-73 279.3 202 100.0
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 4.9e-58 228.4 119 99.2
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.7e-50 202.2 202 81.2
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.9e-49 199.9 202 80.7
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.2e-49 199.1 202 70.3
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.1e-49 198.7 202 80.2
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 6.0e-48 194.9 202 78.2
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 6.0e-48 194.9 202 78.2
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 7.8e-48 194.5 213 72.3
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.3e-47 193.7 204 80.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.9e-47 192.2 202 68.8
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.1e-46 190.7 202 80.2
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.5e-46 189.5 202 74.8
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 4.3e-46 188.7 119 79.8
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 7.3e-46 188.0 202 78.7
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 7.3e-46 188.0 202 80.2
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 1.6e-45 186.8 114 84.2
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 3.6e-45 185.7 119 79.8
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.6e-45 185.7 114 83.3
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 3.6e-45 185.7 114 83.3
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 4.7e-45 185.3 112 84.8
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 4.7e-45 185.3 202 78.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 1.4e-44 183.7 112 83.9
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 2.4e-44 183.0 115 83.5
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 3.1e-44 182.6 204 71.1
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 3.1e-44 182.6 202 77.7
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 4.0e-44 182.2 202 75.7
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 4.0e-44 182.2 202 71.3
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 5.2e-44 181.8 202 68.8
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.2e-43 180.6 116 79.3
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.2e-43 180.6 116 79.3
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 202 78.2
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 119 73.9
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.6e-43 179.5 112 82.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.4e-43 179.1 106 86.8
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 4.4e-43 178.7 116 78.4
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 5.8e-43 178.3 115 80.0
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 5.8e-43 178.3 114 83.3
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 5.8e-43 178.3 106 86.8
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 7.6e-43 177.9 202 73.3
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.3e-42 177.2 113 79.6
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.3e-42 177.2 109 83.5
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 204 76.5
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 114 79.8
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 2.9e-42 176.0 106 84.9
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 3.8e-42 175.6 116 75.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 4.9e-42 175.3 120 78.3
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.4e-42 174.9 119 78.2
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 6.4e-42 174.9 109 82.6
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 6.4e-42 174.9 117 76.9
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.4e-41 173.7 112 80.4
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.4e-41 173.7 209 73.2
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.4e-41 173.7 112 78.6
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.9e-41 173.3 207 69.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.9e-41 173.3 204 77.0
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.9e-41 173.3 107 85.0
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.9e-41 173.3 106 84.0
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.4e-41 172.9 114 77.2
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.4e-41 172.9 143 66.4
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.2e-41 172.6 204 68.6
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.2e-41 172.6 109 80.7
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.3e-41 171.0 202 68.8
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 2.1e-40 169.9 111 79.3
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 2.7e-40 169.5 202 71.8
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 3.5e-40 169.1 202 73.8
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.6e-40 168.7 112 75.9
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 4.6e-40 168.7 104 84.6
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 4.6e-40 168.7 104 84.6
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 4.6e-40 168.7 105 80.0
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 6.0e-40 168.3 106 79.2
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 6.0e-40 168.3 202 72.8
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.0e-40 168.3 112 77.7
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 7.8e-40 167.9 116 72.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.0e-39 167.5 106 78.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 1.7e-39 166.8 112 75.9
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.3e-39 166.4 101 81.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.3e-39 166.4 101 81.2
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.3e-39 166.4 202 70.8
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 3.9e-39 165.6 202 66.8
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 6.6e-39 164.9 108 81.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 8.7e-39 164.5 202 66.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 8.7e-39 164.5 105 78.1
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 8.7e-39 164.5 106 79.2
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-38 163.7 202 68.3
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.5e-38 163.7 114 74.6
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.5e-38 163.7 106 76.4
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.5e-38 163.7 106 76.4
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 1.5e-38 163.7 105 78.1
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.5e-38 163.7 104 79.8
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.5e-38 163.7 106 77.4
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.9e-38 163.3 104 79.8
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.3e-38 162.5 106 78.3
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-38 162.2 202 64.4
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.3e-38 162.2 204 74.0
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 5.6e-38 161.8 106 76.4
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.6e-38 161.8 114 73.7
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 5.6e-38 161.8 106 78.3
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 7.3e-38 161.4 107 76.6
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 7.3e-38 161.4 107 76.6
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 7.3e-38 161.4 107 76.6
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.6e-38 161.0 104 79.8
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-37 160.6 117 72.6
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.1e-37 159.8 106 76.4
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.1e-37 159.8 106 77.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.8e-37 159.5 217 60.4
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.6e-37 159.1 106 76.4
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.6e-37 159.1 106 76.4
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 8.1e-37 157.9 106 74.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 8.1e-37 157.9 105 79.0
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.4e-36 157.1 101 78.2
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 2.4e-36 156.4 105 77.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.0e-36 155.6 103 77.7
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.6e-35 152.9 132 65.9
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 3.4e-35 152.5 184 71.2
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.7e-34 150.2 116 69.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.2e-34 149.8 118 68.6
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.4e-33 147.1 115 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.1e-32 143.3 115 65.2
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 4.6e-32 142.1 86 81.4
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 6.0e-32 141.7 80 87.5
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 3.0e-31 139.4 189 47.1
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 6.6e-31 138.3 118 61.9
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 6.6e-31 138.3 101 68.3
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 6.6e-31 138.3 166 50.6
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 6.2e-29 131.7 76 84.2
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.4e-27 125.9 192 43.2
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 5.8e-27 125.2 111 67.6
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 2.9e-26 122.9 88 72.7
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 6.4e-26 121.7 88 71.6
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.4e-26 121.3 124 59.7
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 4.6e-24 115.5 72 77.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.0e-23 114.4 162 72.2
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.0e-23 112.8 226 36.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 6.7e-23 111.7 87 63.2
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 5.6e-22 108.6 66 84.8
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 5.6e-22 108.6 66 84.8
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 5.3e-20 102.1 167 63.5
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 5.8e-19 98.6 171 61.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.9e-17 93.6 81 64.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 1.9e-17 93.6 72 63.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 3.2e-17 92.8 225 55.6
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 7.1e-17 91.7 156 52.6
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 7.9e-16 88.2 101 48.5
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 1.5e-14 84.0 55 76.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 7.4e-14 81.6 172 37.2
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 7.4e-14 81.6 172 37.2
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 9.6e-14 81.3 76 59.2
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 1.6e-13 80.5 138 76.1
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.6e-13 80.5 54 81.5
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 6.2e-13 78.6 256 43.4
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 5.8e-11 72.0 34 94.1
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.4e-09 67.4 93 44.1
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.4e-09 67.4 51 66.7
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 7.9e-08 61.6 135 70.4
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.0e-07 61.2 138 58.7
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-07 60.5 44 70.5
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 9.7e-06 54.7 39 71.8
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 9.7e-06 54.7 139 52.5
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 9.7e-06 54.7 41 65.9


User provided reference genes

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