Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 0.0e+00 1182.9 596 100.0
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 0.0e+00 1117.8 597 95.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 8.2e-311 1069.7 599 90.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 2.3e-225 785.8 605 70.7
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 9.8e-224 780.4 568 72.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 9.8e-224 780.4 607 69.0
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 6.4e-223 777.7 614 67.6
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 3.2e-222 775.4 553 75.6
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 5.4e-222 774.6 598 70.1
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 1.7e-220 769.6 629 67.6
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 8.6e-220 767.3 603 68.3
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 4.1e-214 748.4 608 67.3
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.6e-213 746.5 606 68.2
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.1e-213 746.1 611 67.8
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.7e-213 745.7 622 67.0
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.5e-211 740.0 609 66.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.9e-211 739.6 605 67.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 2.5e-211 739.2 605 67.4
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 4.3e-211 738.4 572 69.8
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 4.3e-211 738.4 597 67.5
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.6e-210 736.5 617 66.5
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 2.8e-210 735.7 514 74.3
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.2e-210 734.6 604 66.4
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.2e-210 734.6 609 66.2
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 6.8e-209 731.1 605 65.6
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 8.9e-209 730.7 621 64.6
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 7.6e-208 727.6 606 66.5
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 4.9e-207 724.9 597 66.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.1e-206 723.8 555 69.0
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.4e-206 723.4 596 66.3
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.4e-206 723.4 595 65.7
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.1e-205 719.5 605 64.8
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.1e-205 719.5 617 65.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 6.0e-205 718.0 608 64.6
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.0e-204 717.2 416 84.1
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 6.6e-204 714.5 624 64.4
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 3.3e-203 712.2 527 69.6
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 3.3e-203 712.2 614 65.3
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 4.3e-203 711.8 616 63.1
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.2e-202 710.3 546 68.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.6e-202 709.9 550 68.9
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.1e-201 707.2 563 67.0
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 6.9e-201 704.5 602 65.3
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 9.0e-201 704.1 577 66.4
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.6e-200 702.6 613 63.3
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 5.8e-200 701.4 555 66.8
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 9.9e-200 700.7 450 77.3
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.7e-199 699.9 598 64.4
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.2e-199 699.5 601 65.6
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.8e-199 698.7 564 66.5
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.1e-198 697.2 599 65.9
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 1.9e-198 696.4 601 63.4
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.4e-198 696.0 562 67.1
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 2.4e-198 696.0 563 67.0
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.2e-197 693.7 545 67.5
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 1.0e-196 690.6 626 62.0
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.3e-196 690.3 621 62.2
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.1e-195 687.2 602 64.5
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.9e-195 686.4 609 63.9
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 4.3e-195 685.3 600 63.7
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 4.3e-195 685.3 606 63.4
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.6e-194 683.3 472 73.3
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 2.8e-194 682.6 611 64.0
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 6.2e-194 681.4 562 64.4
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.1e-193 680.6 610 63.8
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.4e-193 680.2 581 64.4
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 4.0e-193 678.7 604 61.1
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 1.2e-192 677.2 614 63.2
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 2.6e-192 676.0 598 64.5
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 4.5e-192 675.2 610 62.6
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 5.8e-192 674.9 600 63.3
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.7e-191 673.3 603 63.5
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 2.2e-191 672.9 611 62.7
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 4.9e-191 671.8 602 63.0
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.4e-191 671.4 606 62.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.9e-190 669.8 609 62.1
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.4e-190 669.5 424 78.1
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.2e-190 668.7 414 79.0
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 4.2e-190 668.7 434 77.6
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 4.2e-190 668.7 410 81.0
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.6e-189 666.8 603 62.9
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.9e-189 664.5 606 61.6
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 7.9e-189 664.5 601 62.9
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.3e-188 662.9 570 63.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.0e-188 662.5 609 61.2
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.9e-188 662.1 610 61.1
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 5.1e-188 661.8 411 80.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 6.7e-188 661.4 611 61.9
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.1e-187 660.6 548 64.6
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.9e-187 659.8 508 68.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.3e-187 659.1 563 64.5
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 5.6e-187 658.3 608 62.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.3e-186 657.1 613 60.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 4.8e-186 655.2 619 59.9
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.1e-185 654.1 629 60.6
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.1e-185 652.5 499 67.3
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.3e-185 651.7 630 59.0
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.9e-185 651.4 599 60.6
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.2e-184 650.6 618 60.7
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.5e-184 650.2 609 60.6
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.5e-184 650.2 410 78.8
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 9.9e-184 647.5 613 59.5
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-183 647.1 597 60.5
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 8.4e-183 644.4 604 60.8
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.1e-182 644.0 589 60.8
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.9e-182 643.3 603 59.7
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 2.5e-182 642.9 604 60.8
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 4.2e-182 642.1 605 59.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.2e-182 642.1 488 69.1
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 9.3e-182 641.0 602 60.0
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.1e-181 639.8 482 68.3
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 3.5e-181 639.0 604 59.3
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 7.9e-181 637.9 565 61.2
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 8.7e-180 634.4 604 60.8
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.3e-178 630.6 413 77.2
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 1.6e-178 630.2 612 58.8
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.8e-178 629.4 440 72.3
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 8.2e-178 627.9 598 59.4
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 2.4e-177 626.3 435 71.0
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.0e-176 623.2 609 59.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.0e-176 623.2 609 59.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.6e-176 622.9 615 58.9
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-176 622.9 615 58.9
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.6e-176 622.9 615 58.9
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.2e-175 619.8 570 58.6
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 2.2e-175 619.8 478 69.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-175 619.0 595 59.0
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 4.9e-175 618.6 610 58.5
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 6.5e-175 618.2 453 68.9
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 1.8e-172 610.1 419 73.3
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 8.7e-172 607.8 612 57.7
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 3.3e-171 605.9 628 57.3
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 9.7e-171 604.4 600 57.3
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.1e-165 586.6 362 79.3
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.3e-164 583.2 443 68.2
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.0e-152 543.5 600 54.0
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 2.2e-143 513.5 430 62.6
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.1e-142 511.1 404 64.4
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.5e-142 510.8 323 76.2
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 4.8e-138 495.7 377 69.0
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-136 491.1 548 51.8
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 6.8e-132 475.3 343 69.7
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.0e-127 459.1 292 75.3
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.8e-104 382.1 388 59.5
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 9.9e-99 365.2 209 81.3
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.8e-93 347.1 197 81.7
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 2.8e-93 347.1 397 48.6
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 6.9e-84 315.8 180 81.1
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 8.1e-77 292.4 155 87.7
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 8.1e-77 292.4 155 87.7
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.4e-76 291.6 158 85.4
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 4.5e-75 286.6 252 62.3
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.9e-66 257.3 432 39.6
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.1e-62 245.4 363 38.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.6e-56 223.4 213 60.1
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.4e-49 201.8 182 53.8
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.1e-47 193.4 265 39.2
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.7e-47 193.0 128 77.3
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 2.9e-42 177.6 109 77.1
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.0e-39 167.5 187 51.3
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.2e-34 151.4 110 65.5
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 9.4e-33 146.0 88 77.3
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 2.7e-32 144.4 83 77.1
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 8.0e-32 142.9 243 34.6
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 2.3e-31 141.4 156 53.8
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 2.6e-30 137.9 83 73.5
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 2.2e-29 134.8 99 68.7
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 4.5e-27 127.1 128 53.9
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.8e-21 107.8 119 52.9
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 1.1e-20 105.9 239 40.2
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 9.4e-17 92.8 96 53.1
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 2.3e-15 88.2 149 43.6
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.7e-13 82.0 90 51.1
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.7e-13 82.0 175 34.9
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 9.1e-12 76.3 58 67.2
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 4.5e-11 73.9 58 67.2
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 7.7e-11 73.2 111 40.5
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 3.4e-06 57.8 31 77.4


User provided reference genes

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