Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 7.6e-50 200.3 108 100.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.3e-46 189.5 108 93.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.9e-43 177.2 108 88.9
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 8.8e-30 133.7 108 73.1
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.3e-22 109.0 100 63.0
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-21 106.7 107 60.7
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-21 106.7 107 60.7
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.1e-21 106.7 106 60.4
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.0e-21 105.9 108 59.3
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 9.7e-21 103.6 103 60.2
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 9.7e-21 103.6 108 60.2
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-20 103.2 81 64.2
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.7e-20 102.8 108 58.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.7e-20 102.8 106 53.8
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.7e-20 102.8 101 61.4
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.8e-20 102.1 108 56.5
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.7e-20 101.7 108 57.4
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.8e-20 101.3 100 59.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 8.2e-20 100.5 102 61.8
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 8.2e-20 100.5 109 59.6
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.4e-19 99.8 102 60.8
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.8e-19 99.4 101 58.4
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 2.4e-19 99.0 108 57.4
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.3e-19 97.8 81 61.7
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.1e-19 97.1 105 54.3
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.2e-18 96.7 98 61.2
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.5e-18 96.3 100 55.0
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.6e-18 95.5 103 54.4
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 3.4e-18 95.1 108 53.7
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.5e-18 94.7 102 57.8
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 5.9e-18 94.4 88 54.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 5.9e-18 94.4 71 66.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 5.9e-18 94.4 102 57.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 5.9e-18 94.4 101 54.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 5.9e-18 94.4 58 79.3
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.0e-17 93.6 100 57.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.3e-17 93.2 102 58.8
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.9e-17 92.0 108 54.6
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.9e-17 92.0 108 50.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-16 90.1 97 55.7
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.1e-16 90.1 99 50.5
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.4e-16 89.7 103 56.3
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.5e-16 89.0 102 48.0
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 2.5e-16 89.0 99 50.5
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.2e-16 88.6 108 49.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.2e-16 88.6 108 49.1
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 3.2e-16 88.6 108 52.8
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.2e-16 88.2 72 65.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 4.2e-16 88.2 81 59.3
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 5.5e-16 87.8 66 66.7
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 5.5e-16 87.8 75 62.7
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.5e-16 87.8 93 49.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 7.2e-16 87.4 81 58.0
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 9.4e-16 87.0 109 49.5
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 9.4e-16 87.0 83 57.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.2e-15 86.7 92 52.2
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-15 86.7 108 50.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.2e-15 86.7 82 51.2
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-15 86.7 92 50.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.2e-15 86.7 92 50.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.6e-15 86.3 105 48.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.6e-15 86.3 78 57.7
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.1e-15 85.9 87 52.9
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 2.1e-15 85.9 103 51.5
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.7e-15 85.5 78 57.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.7e-15 85.5 101 51.5
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.7e-15 85.5 83 56.6
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.6e-15 85.1 71 64.8
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 3.6e-15 85.1 78 56.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.7e-15 84.7 106 51.9
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 4.7e-15 84.7 104 51.9
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 6.1e-15 84.3 108 49.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.1e-15 84.3 94 52.1
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 6.1e-15 84.3 106 51.9
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 8.0e-15 84.0 81 58.0
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 8.0e-15 84.0 85 55.3
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 8.0e-15 84.0 110 49.1
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.0e-14 83.6 73 60.3
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.0e-14 83.6 94 56.4
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.0e-14 83.6 99 49.5
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.4e-14 83.2 105 49.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.4e-14 83.2 105 49.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.4e-14 83.2 112 45.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.4e-14 83.2 108 50.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.8e-14 82.8 72 56.9
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.8e-14 82.8 110 50.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.3e-14 82.4 81 53.1
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.3e-14 82.4 108 47.2
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 2.3e-14 82.4 108 46.3
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.0e-14 82.0 109 47.7
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 3.0e-14 82.0 99 51.5
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.9e-14 81.6 81 53.1
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.2e-14 81.3 108 44.4
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.2e-14 81.3 105 49.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.2e-14 81.3 101 48.5
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 5.2e-14 81.3 105 48.6
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 6.7e-14 80.9 102 47.1
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.7e-14 80.9 91 51.6
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.7e-14 80.9 95 53.7
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 6.7e-14 80.9 108 50.0
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.1e-13 80.1 78 52.6
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.1e-13 80.1 101 50.5
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-13 80.1 94 56.4
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.1e-13 80.1 103 50.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.1e-13 80.1 93 58.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.1e-13 80.1 108 45.4
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.5e-13 79.7 80 52.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.0e-13 79.3 106 48.1
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-13 79.3 108 45.4
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 3.3e-13 78.6 101 48.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.3e-13 78.6 116 43.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.3e-13 78.6 112 50.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 5.7e-13 77.8 108 45.4
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 7.4e-13 77.4 101 47.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 9.7e-13 77.0 108 47.2
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.3e-12 76.6 56 73.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.3e-12 76.6 63 60.3
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.7e-12 76.3 93 47.3
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.7e-12 76.3 108 46.3
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.7e-12 75.1 70 57.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 6.3e-12 74.3 108 44.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.1e-11 73.6 76 53.9
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.1e-11 73.6 104 51.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-11 73.6 100 49.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-11 73.2 112 48.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.8e-11 72.8 108 45.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 2.4e-11 72.4 117 46.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.1e-11 71.6 102 46.1
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 5.3e-11 71.2 63 58.7
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.3e-11 71.2 68 55.9
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 7.0e-11 70.9 104 46.2
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.0e-10 69.3 108 38.9
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.0e-10 69.3 108 41.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.6e-10 68.9 71 53.5
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 3.5e-10 68.6 73 56.2
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.0e-09 67.0 39 82.1
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.9e-09 65.5 36 86.1
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 3.8e-09 65.1 53 58.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.0e-09 64.7 78 47.4
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 6.5e-09 64.3 99 43.4
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 8.5e-09 63.9 77 46.8
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 8.5e-09 63.9 77 46.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 8.5e-09 63.9 77 46.8
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-08 63.5 77 46.8
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.5e-08 63.2 93 46.2
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-08 62.8 41 70.7
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-08 62.8 41 70.7
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.9e-08 62.8 41 70.7
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.2e-08 62.0 73 53.4
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.2e-08 61.6 82 41.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.5e-08 61.2 75 46.7
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 7.2e-08 60.8 73 47.9
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.4e-08 60.5 72 47.2
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.4e-08 60.5 72 47.2
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.2e-07 60.1 103 41.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.1e-07 59.3 73 45.2
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.7e-07 58.2 57 57.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.1e-07 57.8 75 44.0
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 8.0e-07 57.4 101 45.5
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.4e-06 56.6 74 41.9
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.4e-06 56.6 93 45.2
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.3e-06 55.8 74 44.6
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.3e-06 55.8 72 41.7
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 2.3e-06 55.8 27 92.6
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 3.0e-06 55.5 71 40.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.0e-06 55.5 71 40.8
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 4.0e-06 55.1 108 37.0
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 4.0e-06 55.1 82 41.5
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 4.0e-06 55.1 90 34.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 5.2e-06 54.7 51 56.9
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 5.2e-06 54.7 93 43.0
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.2e-06 54.7 53 56.6
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 5.2e-06 54.7 86 39.5
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 6.7e-06 54.3 59 49.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 6.7e-06 54.3 71 42.3
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 6.7e-06 54.3 91 38.5
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 8.8e-06 53.9 75 38.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 8.8e-06 53.9 63 44.4
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 8.8e-06 53.9 57 49.1
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 8.8e-06 53.9 51 58.8
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 8.8e-06 53.9 73 39.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 8.8e-06 53.9 73 38.4


User provided reference genes

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