Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 3.9e-67 258.1 137 100.0
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 7.9e-60 233.8 137 92.7
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 4.5e-55 218.0 140 86.4
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 2.6e-47 192.2 139 74.1
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 3.4e-47 191.8 139 74.1
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 5.9e-47 191.0 139 73.4
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 5.9e-47 191.0 139 73.4
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 3.8e-46 188.3 139 75.5
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 8.5e-46 187.2 138 71.0
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 8.5e-46 187.2 140 72.9
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.1e-45 186.8 138 71.0
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.1e-45 186.8 138 71.0
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 1.1e-45 186.8 139 70.5
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 1.9e-45 186.0 139 68.3
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 3.2e-45 185.3 139 69.8
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 9.4e-45 183.7 141 70.9
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 9.4e-45 183.7 141 70.9
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 1.6e-44 183.0 140 68.6
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 1.6e-44 183.0 137 69.3
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 3.6e-44 181.8 145 71.0
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 4.6e-44 181.4 134 72.4
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 1.4e-43 179.9 136 66.9
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 3.0e-43 178.7 140 68.6
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 6.7e-43 177.6 142 69.7
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 1.1e-42 176.8 142 69.0
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 1.1e-42 176.8 140 72.9
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 1.5e-42 176.4 139 71.2
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.5e-42 176.4 134 72.4
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 2.0e-42 176.0 136 68.4
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 2.5e-42 175.6 136 70.6
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 3.3e-42 175.3 139 67.6
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 4.3e-42 174.9 138 69.6
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 4.3e-42 174.9 138 68.8
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 4.3e-42 174.9 134 66.4
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 4.3e-42 174.9 134 64.9
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 5.7e-42 174.5 138 68.8
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 5.7e-42 174.5 138 68.8
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 7.4e-42 174.1 138 68.8
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 1.3e-41 173.3 135 71.1
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.7e-41 172.9 135 71.1
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 2.2e-41 172.6 138 70.3
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 2.8e-41 172.2 138 68.8
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 4.8e-41 171.4 135 71.1
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 4.8e-41 171.4 139 74.1
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 6.3e-41 171.0 137 70.1
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 6.3e-41 171.0 139 67.6
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 8.2e-41 170.6 136 69.1
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.1e-40 170.2 135 69.6
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 1.4e-40 169.9 139 73.4
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 2.4e-40 169.1 136 69.9
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 4.1e-40 168.3 137 70.1
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 5.3e-40 167.9 136 69.1
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 6.9e-40 167.5 139 64.0
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 1.2e-39 166.8 135 69.6
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 1.2e-39 166.8 135 70.4
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 1.2e-39 166.8 136 66.9
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 2.6e-39 165.6 139 67.6
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 2.6e-39 165.6 137 70.1
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 4.5e-39 164.9 138 65.9
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 1.0e-38 163.7 138 67.4
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 1.0e-38 163.7 115 80.9
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 1.0e-38 163.7 139 67.6
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.3e-38 163.3 137 70.1
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 2.9e-38 162.2 138 66.7
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 2.9e-38 162.2 140 66.4
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 3.8e-38 161.8 138 66.7
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 3.8e-38 161.8 138 67.4
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 5.0e-38 161.4 135 67.4
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 5.0e-38 161.4 342 37.1
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 8.5e-38 160.6 134 66.4
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 8.5e-38 160.6 139 66.2
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.1e-37 160.2 141 64.5
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 1.1e-37 160.2 139 66.9
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 1.9e-37 159.5 135 66.7
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 1.9e-37 159.5 135 66.7
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 2.5e-37 159.1 140 65.0
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 4.2e-37 158.3 143 65.0
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 1.2e-36 156.8 135 65.9
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.2e-36 156.8 138 67.4
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 2.1e-36 156.0 140 67.1
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 2.7e-36 155.6 134 62.7
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 7.9e-36 154.1 139 66.9
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 1.0e-35 153.7 136 64.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 3.9e-35 151.8 139 61.2
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 3.9e-35 151.8 139 66.2
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 5.1e-35 151.4 138 65.9
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 1.5e-34 149.8 139 61.9
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.6e-34 149.1 137 65.7
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 2.6e-34 149.1 139 64.7
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 2.4e-32 142.5 154 53.2
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 1.2e-31 140.2 115 68.7
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 3.5e-31 138.7 99 78.8
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 1.1e-29 133.7 139 57.6
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 3.2e-29 132.1 108 71.3
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 3.6e-28 128.6 139 59.0
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 3.0e-27 125.6 111 64.9
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.4e-24 116.7 137 51.8
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 5.3e-24 114.8 77 74.0
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 5.9e-23 111.3 124 41.9
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.3e-22 110.2 111 58.6
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 6.5e-22 107.8 137 41.6
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 3.2e-21 105.5 111 45.9
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 4.2e-21 105.1 129 49.6
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 5.5e-21 104.8 118 51.7
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 7.2e-21 104.4 113 55.8
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 1.6e-20 103.2 116 56.0
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 1.4e-19 100.1 70 72.9
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 8.8e-19 97.4 128 41.4
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.9e-14 82.4 136 42.6
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 2.5e-13 79.3 73 57.5
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.6e-12 76.6 56 66.1
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 2.1e-12 76.3 42 85.7
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 2.7e-12 75.9 67 59.7
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 4.7e-12 75.1 73 53.4
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 9.8e-10 67.4 87 50.6
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 2.4e-08 62.8 72 51.4
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.2e-07 60.5 49 65.3
Zm00001eb359390 Zea mays HOM05D006738 ORTHO05D008191 8.6e-06 54.3 79 46.8


User provided reference genes

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