Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 2.8e-202 708.4 354 100.0
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 7.0e-193 677.2 352 95.2
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.6e-171 605.5 371 85.2
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.1e-153 547.0 343 79.9
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.7e-151 539.7 359 77.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.0e-151 538.1 352 77.0
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.5e-150 536.6 351 77.2
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 3.3e-150 535.4 352 77.3
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 7.3e-150 534.3 357 77.0
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.6e-149 533.1 319 83.4
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.1e-149 532.7 347 76.4
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.1e-149 532.7 322 80.4
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 6.2e-149 531.2 354 76.3
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.8e-148 529.6 358 75.1
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 5.2e-148 528.1 321 79.4
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.8e-148 527.7 311 83.9
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 8.9e-148 527.3 346 76.6
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 8.9e-148 527.3 322 79.2
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 2.0e-147 526.2 341 78.3
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 2.6e-147 525.8 348 78.4
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 3.4e-147 525.4 344 76.2
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 3.4e-147 525.4 351 76.4
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.8e-147 524.6 345 76.8
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 9.9e-147 523.9 342 78.4
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.3e-146 523.5 310 83.2
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.7e-146 523.1 350 75.7
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.9e-146 522.3 343 77.3
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.7e-146 521.9 321 79.4
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 3.7e-146 521.9 323 80.2
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 4.9e-146 521.5 335 78.2
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.9e-146 521.5 321 79.4
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.1e-145 520.4 313 83.1
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.1e-145 520.4 321 81.9
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.9e-145 519.6 354 74.3
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.7e-144 515.8 322 78.3
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 2.7e-144 515.8 307 81.4
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 6.0e-144 514.6 345 74.8
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 6.0e-144 514.6 309 80.9
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 7.8e-144 514.2 304 83.2
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 6.6e-143 511.1 320 78.8
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.5e-142 510.0 372 72.3
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 7.3e-142 507.7 370 71.6
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.6e-141 506.5 343 75.2
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.8e-141 505.8 320 78.4
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 6.2e-141 504.6 339 75.5
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.1e-140 503.8 302 81.1
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.4e-140 503.4 316 78.2
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.4e-140 503.4 323 76.2
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 3.1e-140 502.3 323 78.3
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 6.8e-140 501.1 290 83.1
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 8.9e-140 500.7 323 75.9
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 2.0e-139 499.6 341 75.1
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 4.4e-139 498.4 319 77.1
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 5.8e-139 498.0 325 77.2
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 7.6e-139 497.7 324 77.2
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 7.6e-139 497.7 305 80.7
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 7.6e-139 497.7 306 79.1
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 9.9e-139 497.3 331 76.1
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 2.9e-138 495.7 315 78.4
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.9e-138 495.7 294 83.3
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 6.4e-138 494.6 299 81.3
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.9e-137 493.0 319 76.8
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.4e-137 492.7 310 77.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 3.2e-137 492.3 315 77.5
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.2e-137 492.3 341 73.9
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 3.2e-137 492.3 306 81.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 3.2e-137 492.3 307 78.2
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 9.2e-137 490.7 335 73.4
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.2e-136 490.3 308 80.2
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.3e-135 486.9 336 74.7
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 6.6e-135 484.6 353 70.8
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 6.6e-135 484.6 353 70.8
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.9e-134 483.0 328 76.2
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 2.5e-134 482.6 328 75.9
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 4.3e-134 481.9 307 76.9
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 2.8e-133 479.2 338 71.9
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 3.6e-133 478.8 307 77.2
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.5e-131 473.4 324 73.8
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 4.4e-131 471.9 346 72.0
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.4e-131 471.9 338 71.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-126 457.2 376 65.7
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.3e-126 455.7 284 79.2
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 3.3e-126 455.7 266 88.0
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.8e-125 452.6 305 76.1
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 2.4e-124 449.5 349 69.1
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 5.4e-121 438.3 274 79.2
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 3.0e-119 432.6 290 74.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 3.1e-116 422.5 269 78.4
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 5.1e-111 405.2 280 71.4
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 4.3e-110 402.1 347 59.4
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.6e-109 400.2 352 58.8
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 9.0e-108 394.4 269 74.0
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.7e-106 390.2 299 62.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 2.5e-105 386.3 255 75.7
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 2.1e-104 383.3 268 73.9
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.7e-102 374.4 236 76.7
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.3e-98 364.0 308 58.4
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.9e-98 362.8 301 65.4
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.6e-96 355.5 270 67.8
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.1e-94 350.9 219 75.3
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.1e-94 350.9 336 58.3
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.8e-92 343.6 352 56.5
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 3.1e-92 342.8 200 82.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 4.5e-91 339.0 205 80.5
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.2e-83 314.3 196 80.6
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.2e-82 310.1 341 50.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.8e-82 309.3 308 57.1
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.4e-79 300.8 200 73.0
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.3e-74 284.3 218 64.2
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 4.4e-62 242.7 146 79.5
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 3.1e-60 236.5 195 64.1
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 5.4e-60 235.7 132 84.8
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 7.0e-60 235.3 285 47.7
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 3.6e-56 223.0 248 51.2
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.7e-53 214.2 119 89.1
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.5e-49 200.3 185 57.8
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.6e-48 197.6 318 38.1
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 2.1e-48 197.2 137 70.1
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.7e-48 196.1 120 80.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 8.9e-47 191.8 126 76.2
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 8.9e-47 191.8 126 76.2
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.3e-45 188.0 198 54.5
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 9.2e-44 181.8 122 73.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 3.9e-42 176.4 121 71.1
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 4.0e-39 166.4 157 63.1
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 5.2e-39 166.0 162 58.0
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 4.1e-36 156.4 89 83.1
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.9e-28 131.0 110 65.5
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 2.4e-23 114.0 115 57.4
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.3e-21 108.2 82 65.9
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.9e-20 104.4 55 87.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.3e-18 98.2 144 43.1
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 1.4e-15 88.2 72 69.4
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.4e-15 87.4 80 57.5
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 9.0e-15 85.5 60 76.7
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 9.0e-15 85.5 110 44.5
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.2e-14 85.1 57 70.2
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.4e-14 83.2 55 69.1
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 5.4e-12 76.3 61 67.2
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 5.1e-10 69.7 140 34.3
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.3e-09 66.6 44 70.5
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 5.6e-09 66.2 38 73.7
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 3.1e-07 60.5 42 66.7


User provided reference genes

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