Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040050 Cucumis sativus L. HOM05D000092 ORTHO05D000042 3.7e-73 278.1 138 100.0
ClCG02G007590 Citrullus lanatus HOM05D000092 ORTHO05D000042 1.2e-18 97.1 158 38.0
CsaV3_2G036150 Cucumis sativus L. HOM05D000092 ORTHO05D000042 9.8e-18 94.0 155 37.4
MELO3C024717.2 Cucumis melo HOM05D000092 ORTHO05D000042 8.3e-17 90.9 157 35.0
CsaV3_2G036120 Cucumis sativus L. HOM05D000092 ORTHO05D000042 3.2e-16 89.0 157 34.4
CsaV3_7G022940 Cucumis sativus L. HOM05D000092 ORTHO05D000042 4.1e-16 88.6 155 35.5
ClCG02G016220 Citrullus lanatus HOM05D000092 ORTHO05D000042 3.3e-13 79.0 161 32.3
TPR.G40521 Trifolium pratense HOM05D000092 ORTHO05D000042 1.8e-11 73.2 117 37.6
VMungo1080G0668 Vigna mungo HOM05D000092 ORTHO05D000042 3.1e-11 72.4 124 35.5
Sed0009231 Sechium edule HOM05D000092 ORTHO05D000042 1.2e-10 70.5 159 30.8
Glyma.13G260600 Glycine max HOM05D000092 ORTHO05D000042 3.4e-10 68.9 109 37.6
TPR.G26638 Trifolium pratense HOM05D000092 ORTHO05D000042 3.4e-10 68.9 112 33.0
TPR.G8454 Trifolium pratense HOM05D000092 ORTHO05D000042 3.4e-10 68.9 104 37.5
Psat5g221880 Pisum sativum HOM05D000092 ORTHO05D000042 9.8e-10 67.4 111 35.1
TPR.G29668 Trifolium pratense HOM05D000092 ORTHO05D000042 9.8e-10 67.4 107 34.6
Potri.005G041101 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.3e-09 67.0 87 40.2
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.7e-09 66.6 87 40.2
Sed0000144 Sechium edule HOM05D000092 ORTHO05D000042 1.7e-09 66.6 179 27.4
Cpa.g.c28428.3 Carica papaya HOM05D000092 ORTHO05D000042 2.2e-09 66.2 137 30.7
CsaV3_2G004790 Cucumis sativus L. HOM05D000092 ORTHO05D000042 2.2e-09 66.2 166 27.1
TWI32G0012 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 2.9e-09 65.9 152 30.3
VMungo0331G0485 Vigna mungo HOM05D000092 ORTHO05D000042 2.9e-09 65.9 116 31.9
CsaV3_2G010470 Cucumis sativus L. HOM05D000092 ORTHO05D000042 3.7e-09 65.5 168 28.6
Thecc.09G244900 Theobroma cacao HOM05D000092 ORTHO05D000042 3.7e-09 65.5 156 26.9
arahy.Tifrunner.gnm1.ann1.CRWA07 Arachis hypogaea HOM05D000092 ORTHO05D000042 6.4e-09 64.7 123 30.9
Potri.005G042900 Populus trichocarpa HOM05D000092 ORTHO05D000042 6.4e-09 64.7 87 39.1
MELO3C008572.2 Cucumis melo HOM05D000092 ORTHO05D000042 8.3e-09 64.3 166 31.3
Manes.11G052130 Manihot esculenta HOM05D000092 ORTHO05D000042 8.3e-09 64.3 92 35.9
Manes.11G052160 Manihot esculenta HOM05D000092 ORTHO05D000042 8.3e-09 64.3 92 35.9
Psat5g221920 Pisum sativum HOM05D000092 ORTHO05D000042 8.3e-09 64.3 112 35.7
arahy.Tifrunner.gnm1.ann1.RQU8DI Arachis hypogaea HOM05D000092 ORTHO05D000042 1.4e-08 63.5 156 26.3
Sed0006063 Sechium edule HOM05D000092 ORTHO05D000042 1.4e-08 63.5 158 31.6
ClCG02G016170 Citrullus lanatus HOM05D000092 ORTHO05D000042 2.4e-08 62.8 171 27.5
Medtr2g071980 Medicago truncatula HOM05D000092 ORTHO05D000042 2.4e-08 62.8 107 33.6
Medtr2g072150 Medicago truncatula HOM05D000092 ORTHO05D000042 4.1e-08 62.0 112 33.9
arahy.Tifrunner.gnm1.ann1.DGMY7Y Arachis hypogaea HOM05D000092 ORTHO05D000042 5.4e-08 61.6 133 27.1
arahy.Tifrunner.gnm1.ann1.FV5VRM Arachis hypogaea HOM05D000092 ORTHO05D000042 5.4e-08 61.6 125 31.2
Gorai.013G252900 Gossypium raimondii HOM05D000092 ORTHO05D000042 5.4e-08 61.6 132 36.4
TPR.G26631 Trifolium pratense HOM05D000092 ORTHO05D000042 5.4e-08 61.6 112 33.0
VMungo1383G3284 Vigna mungo HOM05D000092 ORTHO05D000042 5.4e-08 61.6 107 34.6
Gohir.A13G217800 Gossypium hirsutum HOM05D000092 ORTHO05D000042 7.1e-08 61.2 132 36.4
Gohir.D13G221800 Gossypium hirsutum HOM05D000092 ORTHO05D000042 7.1e-08 61.2 130 36.2
Sed0014100 Sechium edule HOM05D000092 ORTHO05D000042 7.1e-08 61.2 159 26.4
Cpa.g.sc504.1 Carica papaya HOM05D000092 ORTHO05D000042 9.2e-08 60.8 91 42.9
Medtr2g072020 Medicago truncatula HOM05D000092 ORTHO05D000042 9.2e-08 60.8 109 32.1
Sed0014220 Sechium edule HOM05D000092 ORTHO05D000042 9.2e-08 60.8 165 27.3
TPR.G35942 Trifolium pratense HOM05D000092 ORTHO05D000042 1.2e-07 60.5 88 38.6
Duzib177G0617 Durio zibethinus HOM05D000092 ORTHO05D000042 1.6e-07 60.1 107 33.6
Medtr1g037250 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-07 60.1 87 37.9
Medtr1g041550 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-07 60.1 88 37.5
Medtr2g072110 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-07 60.1 112 33.0
Potri.005G062130 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.6e-07 60.1 122 27.0
TWI39G0805 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 1.6e-07 60.1 85 38.8
Atru.chr1.2618 Acer truncatum HOM05D000092 ORTHO05D000042 2.1e-07 59.7 128 27.3
Thecc.05G224600 Theobroma cacao HOM05D000092 ORTHO05D000042 2.1e-07 59.7 87 36.8
arahy.Tifrunner.gnm1.ann1.7KAJ7H Arachis hypogaea HOM05D000092 ORTHO05D000042 2.7e-07 59.3 111 29.7
arahy.Tifrunner.gnm1.ann1.V4V3ST Arachis hypogaea HOM05D000092 ORTHO05D000042 2.7e-07 59.3 111 29.7
Medtr2g071890 Medicago truncatula HOM05D000092 ORTHO05D000042 2.7e-07 59.3 111 31.5
Cpa.g.c32363 Carica papaya HOM05D000092 ORTHO05D000042 3.5e-07 58.9 95 40.0
Sed0002149 Sechium edule HOM05D000092 ORTHO05D000042 3.5e-07 58.9 159 28.3
arahy.Tifrunner.gnm1.ann1.P98XPP Arachis hypogaea HOM05D000092 ORTHO05D000042 4.6e-07 58.5 123 27.6
CsaV3_2G033580 Cucumis sativus L. HOM05D000092 ORTHO05D000042 4.6e-07 58.5 157 26.1
Dinv05714 Davidia involucrata HOM05D000092 ORTHO05D000042 4.6e-07 58.5 115 33.0
Lalb_Chr01g0006961 Lupinus albus HOM05D000092 ORTHO05D000042 4.6e-07 58.5 113 31.0
Manes.07G061500 Manihot esculenta HOM05D000092 ORTHO05D000042 4.6e-07 58.5 163 27.0
Medtr2g071870 Medicago truncatula HOM05D000092 ORTHO05D000042 4.6e-07 58.5 118 30.5
Medtr2g072090 Medicago truncatula HOM05D000092 ORTHO05D000042 4.6e-07 58.5 118 30.5
Phvul.008G072100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.6e-07 58.5 101 31.7
Gohir.D11G246760 Gossypium hirsutum HOM05D000092 ORTHO05D000042 6.0e-07 58.2 122 30.3
Medtr0006s0230 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr0012s0150 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr1g036520 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr1g036750 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr1g037130 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr1g051585 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
Medtr8g059345 Medicago truncatula HOM05D000092 ORTHO05D000042 6.0e-07 58.2 88 37.5
VMungo1383G0577 Vigna mungo HOM05D000092 ORTHO05D000042 6.0e-07 58.2 114 32.5
arahy.Tifrunner.gnm1.ann1.178VWH Arachis hypogaea HOM05D000092 ORTHO05D000042 7.8e-07 57.8 123 27.6
Medtr2g071850 Medicago truncatula HOM05D000092 ORTHO05D000042 7.8e-07 57.8 118 30.5
Medtr2g071960 Medicago truncatula HOM05D000092 ORTHO05D000042 7.8e-07 57.8 118 30.5
PGR083G2612 Punica granatum HOM05D000092 ORTHO05D000042 7.8e-07 57.8 87 35.6
TPR.G23975 Trifolium pratense HOM05D000092 ORTHO05D000042 7.8e-07 57.8 126 33.3
Glyma.18G226850 Glycine max HOM05D000092 ORTHO05D000042 1.0e-06 57.4 105 31.4
Manes.03G060801 Manihot esculenta HOM05D000092 ORTHO05D000042 1.0e-06 57.4 106 32.1
Medtr2g072030 Medicago truncatula HOM05D000092 ORTHO05D000042 1.0e-06 57.4 109 28.4
Psat6g104440 Pisum sativum HOM05D000092 ORTHO05D000042 1.0e-06 57.4 88 37.5
TPR.G24012 Trifolium pratense HOM05D000092 ORTHO05D000042 1.0e-06 57.4 87 36.8
Atru.chr4.1749 Acer truncatum HOM05D000092 ORTHO05D000042 1.3e-06 57.0 122 27.0
QL03p001771 Quercus lobata HOM05D000092 ORTHO05D000042 1.3e-06 57.0 122 29.5
VMungo1383G0343 Vigna mungo HOM05D000092 ORTHO05D000042 1.3e-06 57.0 114 28.1
Gohir.A11G235900 Gossypium hirsutum HOM05D000092 ORTHO05D000042 1.7e-06 56.6 85 36.5
Medtr3g013790 Medicago truncatula HOM05D000092 ORTHO05D000042 1.7e-06 56.6 113 32.7
Nn5g28231 Nelumbo nucifera HOM05D000092 ORTHO05D000042 1.7e-06 56.6 122 28.7
Phvul.008G071300 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 1.7e-06 56.6 114 28.9
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-06 56.2 106 26.4
arahy.Tifrunner.gnm1.ann1.X436G5 Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-06 56.2 107 32.7
Ca_13993_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 2.3e-06 56.2 90 33.3
MELO3C031324.2 Cucumis melo HOM05D000092 ORTHO05D000042 2.3e-06 56.2 173 23.1
Lalb_Chr20g0108991 Lupinus albus HOM05D000092 ORTHO05D000042 2.3e-06 56.2 112 30.4
Manes.10G028400 Manihot esculenta HOM05D000092 ORTHO05D000042 2.3e-06 56.2 122 29.5
Phvul.008G072200 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 2.3e-06 56.2 88 31.8
TPR.G93 Trifolium pratense HOM05D000092 ORTHO05D000042 2.3e-06 56.2 108 34.3
GSVIVG01023210001 Vitis vinifera HOM05D000101 ORTHO05D003282 2.3e-06 56.2 119 30.3
Atru.chr1.2689_Atru.chr1.2685 Acer truncatum HOM05D000092 ORTHO05D000042 3.0e-06 55.8 167 25.7
Medtr2g072820 Medicago truncatula HOM05D000092 ORTHO05D000042 3.0e-06 55.8 112 31.2
Potri.013G027300 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.0e-06 55.8 93 37.6
Prupe.7G037500 Prunus persica HOM05D000092 ORTHO05D000042 3.0e-06 55.8 103 33.0
TWI32G0224 Tripterygium wilfordii HOM05D000092 ORTHO05D000042 3.0e-06 55.8 85 35.3
VMungo1383G0679 Vigna mungo HOM05D000092 ORTHO05D000042 3.0e-06 55.8 105 29.5
VMungo1383G1501 Vigna mungo HOM05D000092 ORTHO05D000042 3.0e-06 55.8 105 31.4
Dinv20556 Davidia involucrata HOM05D000092 ORTHO05D000042 3.9e-06 55.5 126 31.7
Dinv20740 Davidia involucrata HOM05D000092 ORTHO05D000042 3.9e-06 55.5 126 31.7
Eucgr.L00094 Eucalyptus grandis HOM05D000092 ORTHO05D000042 3.9e-06 55.5 102 31.4
Manes.07G062348 Manihot esculenta HOM05D000092 ORTHO05D000042 3.9e-06 55.5 92 34.8
Medtr0406s0030 Medicago truncatula HOM05D000092 ORTHO05D000042 3.9e-06 55.5 88 35.2
Potri.005G061860 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.9e-06 55.5 122 26.2
Sed0002397 Sechium edule HOM05D000092 ORTHO05D000042 3.9e-06 55.5 121 25.6
TPR.G18289 Trifolium pratense HOM05D000092 ORTHO05D000042 3.9e-06 55.5 98 31.6
arahy.Tifrunner.gnm1.ann1.IEL5NN Arachis hypogaea HOM05D000092 ORTHO05D000042 5.1e-06 55.1 112 32.1
CSS0027046 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 5.1e-06 55.1 78 42.3
Cfa019909 Carpinus fangiana HOM05D000092 ORTHO05D000042 5.1e-06 55.1 88 36.4
MELO3C031556.2 Cucumis melo HOM05D000092 ORTHO05D000042 5.1e-06 55.1 158 25.3
Manes.07G062220 Manihot esculenta HOM05D000092 ORTHO05D000042 5.1e-06 55.1 92 34.8
Manes.08G163700 Manihot esculenta HOM05D000092 ORTHO05D000042 5.1e-06 55.1 122 25.4
Manes.10G028501 Manihot esculenta HOM05D000092 ORTHO05D000042 5.1e-06 55.1 122 29.5
QL10p064757 Quercus lobata HOM05D000092 ORTHO05D000042 5.1e-06 55.1 122 27.0
CSS0003439 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 6.6e-06 54.7 102 35.3
Ciclev10000055m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.6e-06 54.7 86 37.2
Ciclev10018706m.g Citrus clementina HOM05D000092 ORTHO05D000042 6.6e-06 54.7 121 32.2
Dinv03078 Davidia involucrata HOM05D000092 ORTHO05D000042 6.6e-06 54.7 84 40.5
Eucgr.G00539 Eucalyptus grandis HOM05D000092 ORTHO05D000042 6.6e-06 54.7 91 30.8
Glyma.U031914 Glycine max HOM05D000092 ORTHO05D000042 6.6e-06 54.7 147 25.2
TPR.G10643 Trifolium pratense HOM05D000092 ORTHO05D000042 6.6e-06 54.7 80 37.5
TPR.G11129 Trifolium pratense HOM05D000092 ORTHO05D000042 6.6e-06 54.7 123 28.5
VMungo0540G0543 Vigna mungo HOM05D000092 ORTHO05D000042 6.6e-06 54.7 152 25.0
MBI02_g10557_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 8.6e-06 54.3 104 28.8
Manes.07G060866 Manihot esculenta HOM05D000092 ORTHO05D000042 8.6e-06 54.3 92 33.7
Manes.07G062372 Manihot esculenta HOM05D000092 ORTHO05D000042 8.6e-06 54.3 82 36.6
Phvul.005G062300 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 8.6e-06 54.3 161 25.5
Phvul.008G072300 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 8.6e-06 54.3 105 30.5
Potri.019G036875 Populus trichocarpa HOM05D000092 ORTHO05D000042 8.6e-06 54.3 122 27.0
PGR042G3045 Punica granatum HOM05D000092 ORTHO05D000042 8.6e-06 54.3 99 34.3
Sabra13G0019000 Salix brachista HOM05D000092 ORTHO05D000042 8.6e-06 54.3 87 36.8
Thecc.05G245100 Theobroma cacao HOM05D000092 ORTHO05D000042 8.6e-06 54.3 92 32.6
TPR.G28439 Trifolium pratense HOM05D000092 ORTHO05D000042 8.6e-06 54.3 87 34.5
GSVIVG01023207001 Vitis vinifera HOM05D000101 ORTHO05D003282 8.6e-06 54.3 119 29.4


User provided reference genes

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