Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 4.0e-145 518.1 264 100.0
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 5.3e-129 464.5 255 94.5
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.9e-126 456.1 254 92.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.3e-111 406.8 255 83.5
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 9.1e-97 357.5 255 73.3
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.6e-96 356.7 218 81.7
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.6e-96 356.7 229 78.6
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 5.9e-96 354.8 247 73.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.0e-95 354.0 223 80.7
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.7e-95 353.2 232 76.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.9e-95 352.4 241 75.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 3.8e-95 352.1 236 77.1
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 4.2e-94 348.6 232 76.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 9.4e-94 347.4 255 72.9
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 8.0e-93 344.4 254 70.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 8.0e-93 344.4 219 80.4
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 8.0e-93 344.4 256 72.3
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 8.0e-93 344.4 217 80.6
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.4e-92 343.6 218 78.9
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.4e-92 343.6 235 74.9
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.8e-92 343.2 219 77.2
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.8e-92 343.2 233 76.4
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.8e-92 343.2 219 79.5
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 2.3e-92 342.8 233 74.2
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 2.3e-92 342.8 233 74.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.0e-92 342.4 218 79.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.0e-92 342.0 233 76.0
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 5.2e-92 341.7 228 75.9
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.8e-92 341.3 251 71.7
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 8.8e-92 340.9 206 83.0
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.2e-91 340.5 219 78.5
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.2e-91 340.5 218 79.4
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-91 340.5 206 81.6
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.6e-91 339.3 219 80.4
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 2.6e-91 339.3 219 79.0
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 3.4e-91 339.0 256 71.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 4.4e-91 338.6 218 79.4
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 5.7e-91 338.2 255 71.0
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.7e-91 338.2 233 75.1
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.5e-91 337.8 253 71.5
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 9.8e-91 337.4 214 79.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 9.8e-91 337.4 205 80.0
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.3e-90 337.0 254 69.7
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.7e-90 336.7 216 77.3
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-90 336.7 206 79.6
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.7e-90 336.7 225 75.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.8e-90 335.9 215 78.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.8e-90 335.9 225 75.1
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.7e-90 335.5 214 79.0
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 4.8e-90 335.1 204 81.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 6.3e-90 334.7 214 79.0
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 6.3e-90 334.7 223 75.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 6.3e-90 334.7 225 75.6
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-89 334.0 216 76.9
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.4e-89 333.6 205 79.5
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.8e-89 333.2 205 79.5
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.8e-89 333.2 243 72.8
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-89 332.8 245 71.4
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.4e-89 332.8 215 78.1
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 2.4e-89 332.8 215 78.1
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.4e-89 332.8 215 78.1
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.1e-89 332.4 217 76.5
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.1e-89 332.4 217 76.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 3.1e-89 332.4 214 78.5
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 4.1e-89 332.0 215 77.7
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 7.0e-89 331.3 251 70.5
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 7.0e-89 331.3 256 66.8
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 9.1e-89 330.9 217 76.5
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 9.1e-89 330.9 243 67.9
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 9.1e-89 330.9 234 72.6
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.0e-88 329.7 242 71.9
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.0e-88 329.7 206 79.6
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 3.5e-88 328.9 247 67.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.5e-88 328.6 218 75.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 5.9e-88 328.2 216 77.3
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.3e-87 327.0 256 66.4
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.7e-87 326.6 216 76.9
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.7e-87 326.6 221 74.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-87 326.6 205 78.0
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.2e-87 326.2 259 68.0
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.8e-87 325.5 259 68.0
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 8.5e-87 324.3 213 74.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.9e-86 323.2 262 66.0
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.2e-86 322.0 269 65.8
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.2e-86 322.0 213 74.2
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 4.2e-86 322.0 236 73.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 5.5e-86 321.6 205 77.6
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.5e-86 321.6 251 68.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.2e-85 320.5 269 65.1
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.4e-84 317.0 235 68.5
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 5.2e-84 315.1 193 81.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 2.0e-83 313.2 214 73.4
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.4e-83 312.4 257 68.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 7.5e-83 311.2 217 71.0
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 9.8e-83 310.8 251 66.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.2e-82 309.7 236 66.5
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-81 307.4 214 73.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.1e-81 307.4 210 73.3
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.1e-81 305.4 214 71.5
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 5.9e-80 301.6 192 79.2
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.5e-78 296.2 200 75.5
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-77 293.5 238 65.1
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.0e-76 288.9 209 67.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.8e-76 288.1 178 80.3
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 2.0e-75 286.6 217 68.2
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 5.7e-75 285.0 173 79.8
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.2e-74 283.1 208 67.3
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.9e-74 282.0 223 64.1
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.6e-72 275.4 322 51.2
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.0e-71 271.9 183 72.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-70 269.6 183 72.7
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.3e-70 268.9 207 66.7
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 9.5e-70 267.7 235 57.4
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.8e-68 263.5 222 63.5
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.7e-66 256.9 238 55.9
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.2e-66 256.5 234 60.7
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.9e-66 256.1 247 58.7
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 4.1e-65 252.3 195 69.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 9.2e-65 251.1 208 63.0
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 2.7e-64 249.6 207 60.4
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 5.0e-63 245.4 181 71.8
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 6.6e-63 245.0 208 64.9
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.2e-61 240.7 170 72.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 5.1e-55 218.8 123 89.4
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.3e-54 215.7 182 63.7
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.6e-53 213.8 223 53.8
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.5e-51 207.2 120 90.0
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 7.6e-51 204.9 117 87.2
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.3e-50 204.1 216 54.6
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.3e-42 177.6 111 77.5
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.7e-42 177.2 206 45.1
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 5.4e-41 172.2 108 80.6
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-40 170.6 104 80.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 4.0e-36 156.0 94 78.7
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.0e-35 153.7 124 62.1
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 5.8e-35 152.1 87 86.2
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.9e-34 149.1 130 54.6
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.7e-32 143.3 97 73.2
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 6.0e-32 142.1 110 67.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.9e-31 139.4 157 48.4
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.6e-29 134.0 224 39.3
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 8.1e-29 131.7 86 73.3
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 8.4e-26 121.7 91 69.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.1e-25 121.3 93 62.4
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.5e-22 110.2 61 86.9
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.5e-22 110.2 61 86.9
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.3e-22 109.8 63 82.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.6e-21 107.5 63 81.0
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 3.7e-21 106.3 70 74.3
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-20 103.6 74 68.9
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.6e-19 98.6 69 68.1
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.7e-16 90.1 192 36.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.3e-15 87.8 112 47.3
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.9e-14 84.0 88 50.0
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.5e-11 72.8 61 59.0
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.0e-10 71.6 46 73.9
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.7e-07 58.9 34 73.5


User provided reference genes

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