Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 2.4e-198 695.3 348 100.0
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 5.8e-184 647.5 338 95.6
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 7.3e-179 630.6 344 91.6
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 5.3e-177 624.4 348 90.5
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 1.6e-162 576.2 349 81.4
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 2.1e-162 575.9 345 81.2
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 9.0e-161 570.5 345 81.2
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 5.8e-160 567.8 345 79.4
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 1.0e-159 567.0 346 80.3
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 1.7e-159 566.2 345 80.3
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 8.4e-159 563.9 344 81.1
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.4e-158 563.1 341 82.4
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 1.4e-158 563.1 345 78.6
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 1.9e-158 562.8 341 79.2
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 2.5e-158 562.4 346 80.9
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 2.5e-158 562.4 350 79.1
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 2.5e-158 562.4 344 80.2
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 4.2e-158 561.6 344 80.2
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 5.5e-158 561.2 342 78.9
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 9.3e-158 560.5 344 80.8
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 6.1e-157 557.8 341 77.7
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 7.9e-157 557.4 345 79.1
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 1.3e-156 556.6 341 78.6
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 3.0e-156 555.4 344 79.1
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 5.1e-156 554.7 345 79.1
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 5.1e-156 554.7 346 79.2
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 6.7e-156 554.3 339 79.4
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 6.7e-156 554.3 344 79.9
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 8.7e-156 553.9 341 80.9
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 8.7e-156 553.9 345 77.7
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.5e-155 552.4 347 77.2
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 3.3e-155 552.0 343 80.2
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 4.3e-155 551.6 341 79.5
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 4.3e-155 551.6 316 82.6
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 7.4e-155 550.8 336 80.1
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 7.4e-155 550.8 344 79.7
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 9.7e-155 550.4 343 77.0
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 1.3e-154 550.1 341 78.6
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 2.2e-154 549.3 341 78.6
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 2.8e-154 548.9 343 80.2
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 4.8e-154 548.1 346 78.6
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 1.1e-153 547.0 335 79.7
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.4e-153 546.6 347 75.8
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 1.4e-153 546.6 342 78.9
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 2.4e-153 545.8 342 78.4
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 5.3e-153 544.7 342 78.4
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 5.3e-153 544.7 349 78.2
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 1.5e-152 543.1 342 78.7
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 1.5e-152 543.1 342 77.8
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 2.6e-152 542.3 392 69.4
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 3.4e-152 542.0 342 77.8
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 4.5e-152 541.6 332 78.3
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 1.0e-151 540.4 342 77.2
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 1.0e-151 540.4 342 77.2
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 1.3e-151 540.0 346 76.9
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 1.3e-151 540.0 342 77.2
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 1.3e-151 540.0 341 78.0
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 1.3e-151 540.0 328 79.3
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 2.2e-151 539.3 339 77.0
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 2.9e-151 538.9 342 77.5
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 5.0e-151 538.1 350 77.1
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 1.1e-150 537.0 342 77.5
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 4.2e-150 535.0 342 76.6
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 5.5e-150 534.6 342 76.3
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 9.4e-150 533.9 343 77.0
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 9.4e-150 533.9 337 76.9
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 2.7e-149 532.3 344 77.3
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 7.9e-149 530.8 351 75.8
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 5.1e-148 528.1 339 76.4
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 1.1e-147 526.9 305 83.0
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 1.7e-146 523.1 344 73.8
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 3.7e-146 521.9 347 73.2
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.0e-143 513.8 343 73.5
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.3e-143 513.5 372 72.0
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 1.7e-143 513.1 347 72.3
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 5.0e-143 511.5 341 75.7
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 4.2e-142 508.4 342 73.7
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 4.7e-141 505.0 342 72.5
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 1.5e-139 500.0 345 74.8
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 2.9e-135 485.7 343 70.0
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 3.8e-135 485.3 341 71.3
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 6.5e-135 484.6 339 69.9
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 1.5e-131 473.4 319 69.6
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 4.8e-130 468.4 318 70.1
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 9.1e-129 464.2 263 86.3
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 2.2e-127 459.5 351 64.7
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 5.7e-123 444.9 393 62.3
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 4.1e-121 438.7 341 66.6
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 5.0e-119 431.8 253 83.4
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 5.5e-118 428.3 298 68.5
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 6.1e-117 424.9 341 65.1
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 6.1e-117 424.9 336 66.1
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 3.5e-112 409.1 342 65.2
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.3e-111 406.4 341 62.5
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 3.8e-111 405.6 229 84.7
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 5.6e-110 401.7 529 47.3
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 6.4e-106 388.3 222 84.2
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.9e-102 376.7 248 77.0
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 3.0e-87 326.2 188 81.9
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 3.1e-84 316.2 337 53.4
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 3.4e-75 286.2 161 80.7
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 4.6e-72 275.8 177 76.3
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 1.9e-70 270.4 248 56.0
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 1.1e-68 264.6 363 39.9
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 3.9e-63 246.1 327 43.1
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 3.4e-59 233.0 142 78.9
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 1.0e-55 221.5 127 84.3
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 5.5e-49 199.1 326 37.7
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.5e-46 190.3 126 72.2
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 5.7e-46 189.1 345 34.8
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.8e-39 167.5 97 81.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.4e-36 157.1 98 70.4
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 5.0e-34 149.4 84 84.5
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 4.5e-27 126.3 83 68.7
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 2.3e-23 114.0 59 86.4
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 5.9e-19 99.4 76 64.5
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 7.2e-17 92.4 56 85.7
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 1.1e-12 78.6 141 39.7
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 3.5e-11 73.6 38 78.9
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 2.3e-07 60.8 59 49.2
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 8.8e-07 58.9 30 90.0


User provided reference genes

Program Settings