Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 2.8e-55 218.8 145 100.0
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 6.8e-54 214.2 145 97.9
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 3.4e-45 185.3 145 88.3
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 1.7e-36 156.4 145 82.1
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 4.0e-30 135.2 135 71.9
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 5.3e-30 134.8 134 70.1
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 7.6e-29 131.0 138 61.6
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 7.6e-29 131.0 134 65.7
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 3.8e-28 128.6 134 73.9
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 8.4e-28 127.5 152 63.8
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 1.1e-27 127.1 148 68.9
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 1.4e-27 126.7 146 65.1
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 1.9e-27 126.3 140 66.4
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 2.1e-26 122.9 138 66.7
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 4.6e-26 121.7 141 69.5
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 4.6e-26 121.7 141 69.5
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 5.1e-25 118.2 139 56.8
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 5.1e-25 118.2 140 55.0
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 5.1e-25 118.2 131 60.3
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 6.7e-25 117.9 139 56.1
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 8.7e-25 117.5 141 58.2
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 2.5e-24 115.9 142 63.4
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 5.6e-24 114.8 140 57.1
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 7.4e-24 114.4 135 66.7
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 1.3e-23 113.6 140 65.7
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 1.3e-23 113.6 140 65.7
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 1.6e-23 113.2 143 67.8
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 2.1e-23 112.8 138 58.0
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 2.1e-23 112.8 133 57.9
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 3.7e-23 112.1 141 56.0
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 4.8e-23 111.7 144 65.3
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 6.2e-23 111.3 134 68.7
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 8.2e-23 110.9 130 72.3
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 1.1e-22 110.5 137 66.4
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 1.4e-22 110.2 135 65.9
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 1.8e-22 109.8 136 63.2
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 2.4e-22 109.4 128 71.1
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 6.9e-22 107.8 141 66.7
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 9.0e-22 107.5 136 65.4
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 1.5e-21 106.7 141 59.6
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 3.4e-21 105.5 140 53.6
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 3.4e-21 105.5 140 53.6
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 7.6e-21 104.4 132 60.6
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 7.6e-21 104.4 132 66.7
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 7.6e-21 104.4 131 61.8
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 7.6e-21 104.4 136 59.6
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 1.7e-20 103.2 140 58.6
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 1.7e-20 103.2 140 57.9
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 1.7e-20 103.2 140 57.9
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 2.2e-20 102.8 133 66.9
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 6.5e-20 101.3 135 62.2
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 6.5e-20 101.3 132 65.9
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 1.4e-19 100.1 130 65.4
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 1.9e-19 99.8 138 56.5
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 1.9e-19 99.8 140 52.1
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 4.2e-19 98.6 141 66.0
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 5.5e-19 98.2 137 62.8
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 7.1e-19 97.8 138 52.9
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 9.3e-19 97.4 128 62.5
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 2.1e-18 96.3 140 59.3
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 2.7e-18 95.9 130 56.9
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 6.0e-18 94.7 138 60.1
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 6.0e-18 94.7 119 64.7
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 1.0e-17 94.0 124 54.0
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 1.3e-17 93.6 141 55.3
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 1.8e-17 93.2 130 64.6
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 1.8e-17 93.2 127 63.8
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 3.9e-17 92.0 140 55.0
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 6.7e-17 91.3 140 57.9
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 6.7e-17 91.3 140 57.9
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 6.7e-17 91.3 140 57.9
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 6.7e-17 91.3 140 57.9
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 6.7e-17 91.3 137 61.3
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 1.1e-16 90.5 140 51.4
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 1.9e-16 89.7 137 61.3
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.9e-16 89.7 135 58.5
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 4.3e-16 88.6 141 61.0
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 7.4e-16 87.8 153 47.7
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 1.4e-14 83.6 160 45.0
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 1.8e-14 83.2 131 60.3
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 1.8e-14 83.2 133 60.2
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 1.5e-13 80.1 101 72.3
MD05G1000400 Malus domestica HOM05D007581 ORTHO05D009250 4.5e-13 78.6 112 57.1
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 2.9e-12 75.9 84 66.7
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 5.0e-12 75.1 173 48.0
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 1.4e-11 73.6 131 57.3
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 4.2e-11 72.0 96 68.8
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 7.2e-11 71.2 136 55.1
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 2.7e-10 69.3 88 75.0
HanXRQChr04g0102981 Helianthus annuus HOM05D007581 ORTHO05D009250 2.7e-10 69.3 95 72.6
VMungo0464G1076 Vigna mungo HOM05D007581 ORTHO05D009250 2.3e-09 66.2 122 47.5
MD02G1202800 Malus domestica HOM05D007581 ORTHO05D009250 1.5e-08 63.5 99 48.5
QL09p000872 Quercus lobata HOM05D007581 ORTHO05D009250 3.7e-07 58.9 97 71.1
Mapoly0034s0024 Marchantia polymorpha HOM05D020710 ORTHO05D009250 6.3e-07 58.2 135 51.9
Cfa008025 Carpinus fangiana HOM05D007581 ORTHO05D009250 1.4e-06 57.0 32 75.0
Dinv25473 Davidia involucrata HOM05D007581 ORTHO05D009250 1.8e-06 56.6 59 44.1
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 2.4e-06 56.2 99 63.6


User provided reference genes

Program Settings