Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.0e-169 597.4 305 100.0
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 5.7e-151 537.7 307 91.2
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.4e-133 479.9 307 82.7
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.2e-96 355.1 183 98.4
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.4e-93 346.3 309 66.7
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 2.1e-92 343.2 301 65.8
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 3.6e-89 332.4 309 64.1
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 8.9e-88 327.8 302 64.6
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.1e-85 318.9 317 62.1
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 7.1e-85 318.2 308 63.3
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.1e-84 316.6 324 60.5
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.3e-83 313.2 308 61.0
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 3.0e-83 312.8 309 62.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 3.9e-83 312.4 313 60.4
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.1e-83 312.0 320 60.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.9e-82 310.1 302 61.6
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.3e-82 309.3 311 58.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.3e-82 309.3 315 61.3
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 9.6e-82 307.8 310 61.9
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.8e-81 306.2 313 60.1
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.1e-80 304.3 251 68.5
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.1e-80 304.3 313 59.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.4e-80 303.1 308 58.4
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.0e-80 302.4 226 73.5
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.2e-80 302.0 310 58.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.2e-80 302.0 311 59.5
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.5e-79 300.4 310 58.4
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.0e-79 300.1 317 59.0
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 4.4e-79 298.9 299 62.2
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 7.6e-79 298.1 247 69.6
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.8e-78 295.8 296 61.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.4e-78 295.0 301 59.8
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 8.4e-78 294.7 306 59.5
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-77 293.5 303 60.1
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-77 293.5 303 60.1
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 9.3e-77 291.2 281 61.2
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.1e-76 290.0 255 67.5
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.1e-76 290.0 291 61.2
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.7e-76 289.7 339 56.3
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.7e-76 289.7 299 59.9
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 6.0e-76 288.5 314 58.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.7e-75 287.0 296 58.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.6e-75 285.0 296 58.4
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.6e-74 282.0 308 55.5
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 5.6e-74 282.0 305 56.4
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.3e-73 280.8 264 65.5
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.8e-73 278.9 300 59.0
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-72 276.9 303 57.4
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.5e-71 272.3 303 56.8
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.9e-71 271.2 310 56.8
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.2e-70 270.0 308 54.9
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.2e-70 270.0 336 51.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.9e-70 269.6 303 56.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.9e-70 268.9 308 54.9
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-69 267.7 270 62.6
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-69 267.7 292 56.5
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.4e-69 266.5 299 56.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 3.2e-69 266.2 310 54.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.2e-69 266.2 297 58.2
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 4.2e-69 265.8 323 53.3
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 9.3e-69 264.6 299 57.2
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 9.3e-69 264.6 323 53.6
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 9.3e-69 264.6 306 55.9
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 3.5e-68 262.7 305 56.1
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 4.6e-68 262.3 318 56.3
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.9e-68 261.5 310 52.6
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.8e-67 260.4 316 53.8
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 2.3e-67 260.0 303 53.5
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 3.0e-67 259.6 261 60.9
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 5.1e-67 258.8 316 53.5
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 6.7e-67 258.5 302 53.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-66 257.3 320 49.7
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 9.6e-66 254.6 233 63.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 9.6e-66 254.6 269 62.1
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.6e-65 253.8 229 63.8
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.1e-65 253.4 282 57.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.1e-64 249.6 241 63.1
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.3e-64 248.8 235 60.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 5.3e-64 248.8 306 53.6
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 9.0e-64 248.1 321 51.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.5e-63 247.3 322 49.4
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.4e-63 246.1 271 58.3
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 9.9e-63 244.6 299 54.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.7e-62 243.8 321 49.8
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.2e-62 243.4 323 49.2
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.8e-62 242.7 308 52.9
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 8.4e-62 241.5 339 50.4
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 7.1e-61 238.4 275 54.5
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.6e-60 237.3 291 54.0
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.6e-60 235.7 301 49.8
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.0e-59 234.6 224 61.2
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.3e-59 234.2 346 50.3
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.3e-59 234.2 337 47.5
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.3e-58 229.6 346 48.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-56 224.6 269 57.6
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 5.8e-55 218.8 331 49.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.0e-54 218.0 264 53.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 4.9e-54 215.7 302 50.7
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.5e-54 215.3 250 58.0
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.1e-53 214.5 343 48.1
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.9e-53 213.8 232 60.8
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.9e-53 213.8 295 49.2
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 7.1e-53 211.8 353 45.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 7.1e-53 211.8 226 59.7
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 9.3e-53 211.5 320 45.9
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.6e-52 210.7 350 45.7
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 7.9e-52 208.4 350 45.7
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 7.9e-52 208.4 350 45.4
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-51 208.0 271 53.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.0e-51 208.0 271 53.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-51 207.2 229 57.6
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.8e-51 207.2 253 49.8
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 5.1e-51 205.7 335 45.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 8.7e-51 204.9 343 45.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-50 203.8 335 45.1
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-50 203.4 227 57.7
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.3e-49 201.1 342 44.2
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.7e-49 199.5 241 53.5
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.7e-49 199.5 334 47.6
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 6.3e-49 198.7 330 47.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.1e-48 198.0 301 47.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.1e-48 196.4 302 48.0
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 6.9e-48 195.3 325 41.5
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 9.0e-48 194.9 252 50.4
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-47 194.5 345 43.8
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-47 194.5 345 43.8
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.6e-47 193.4 346 44.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.5e-47 192.6 328 47.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 6.5e-46 188.7 346 43.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.9e-45 187.2 329 44.4
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.2e-45 186.4 306 44.4
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 7.2e-45 185.3 304 44.4
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 7.2e-45 185.3 360 41.9
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.6e-44 183.0 337 43.6
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.1e-44 182.2 308 45.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.8e-43 180.6 306 43.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.0e-43 179.9 223 55.2
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.1e-43 179.1 293 45.1
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.1e-43 179.1 294 43.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.8e-40 170.6 289 46.0
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.4e-40 170.2 297 44.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.1e-40 169.9 297 45.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 6.9e-40 168.7 299 44.1
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-37 160.2 208 50.0
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 4.2e-37 159.5 258 45.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.0e-35 154.8 165 57.6
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.0e-34 150.6 159 54.1
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 9.7e-34 148.3 284 39.1
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-33 147.9 284 39.4
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 2.8e-33 146.7 284 39.4
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.8e-33 146.7 284 39.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.8e-32 144.1 113 71.7
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 4.5e-31 139.4 112 67.9
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-28 130.2 286 38.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.7e-26 122.5 287 38.7
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.7e-26 122.5 302 38.1
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 7.7e-23 112.1 289 36.3
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.7e-22 110.9 181 47.5
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.9e-21 107.5 226 39.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.2e-20 104.8 178 43.8
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 5.9e-15 85.9 64 73.4
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 5.9e-15 85.9 61 72.1
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 1.3e-09 68.2 213 29.6


User provided reference genes

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