Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 1.1e-29 132.5 61 100.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.3e-25 119.0 61 85.2
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 5.9e-23 110.2 56 83.9
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.6e-23 109.8 56 82.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.3e-22 109.0 56 82.1
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 5.0e-22 107.1 56 80.4
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 8.5e-22 106.3 56 80.4
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 8.5e-22 106.3 56 82.1
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 8.5e-22 106.3 56 82.1
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.1e-21 105.9 56 80.4
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.1e-21 105.9 55 83.6
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 1.1e-21 105.9 53 86.8
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.9e-21 105.1 55 81.8
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.5e-21 104.8 56 83.9
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.2e-21 104.4 54 81.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 3.2e-21 104.4 53 83.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.2e-21 104.4 54 81.5
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 4.2e-21 104.0 55 80.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 4.2e-21 104.0 56 78.6
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 5.5e-21 103.6 58 77.6
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.2e-21 103.2 53 84.9
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 9.3e-21 102.8 54 79.6
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.2e-20 102.4 55 76.4
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 1.6e-20 102.1 54 79.6
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.1e-20 101.7 55 76.4
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 2.1e-20 101.7 55 78.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.7e-20 101.3 53 79.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 2.7e-20 101.3 55 78.2
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.7e-20 101.3 53 81.1
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.7e-20 101.3 55 81.8
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 3.6e-20 100.9 53 79.2
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 3.6e-20 100.9 53 79.2
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 3.6e-20 100.9 53 79.2
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 3.6e-20 100.9 53 79.2
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.6e-20 100.9 55 80.0
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.6e-20 100.9 55 80.0
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 3.6e-20 100.9 53 84.9
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 4.6e-20 100.5 53 77.4
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 4.6e-20 100.5 53 83.0
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.0e-19 99.4 53 79.2
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.0e-19 99.4 53 79.2
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.0e-19 99.4 55 78.2
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.3e-19 99.0 55 76.4
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.3e-19 99.0 56 76.8
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 1.8e-19 98.6 55 80.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.8e-19 98.6 58 75.9
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.1e-19 97.1 53 79.2
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 6.7e-19 96.7 55 78.2
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 8.7e-19 96.3 55 74.5
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 8.7e-19 96.3 55 74.5
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 8.7e-19 96.3 55 74.5
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 8.7e-19 96.3 57 73.7
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 8.7e-19 96.3 55 76.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 8.7e-19 96.3 58 75.9
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.5e-18 95.5 59 69.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 77.4
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.4e-18 93.2 56 75.0
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 9.7e-18 92.8 53 75.5
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 1.3e-17 92.4 57 68.4
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.6e-17 92.0 52 76.9
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.2e-17 91.7 55 69.1
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.2e-17 91.7 58 72.4
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.8e-17 91.3 52 76.9
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.8e-17 91.3 52 76.9
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.8e-17 91.3 52 76.9
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 3.7e-17 90.9 53 73.6
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 8.2e-17 89.7 50 78.0
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.2e-17 89.7 54 72.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.4e-16 89.0 54 72.2
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.8e-16 88.6 54 72.2
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 3.1e-16 87.8 48 77.1
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 3.1e-16 87.8 59 66.1
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 5.3e-16 87.0 53 73.6
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.2e-15 85.9 53 67.9
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.5e-15 85.5 54 68.5
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.0e-15 85.1 45 82.2
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-15 84.3 45 84.4
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.4e-15 84.3 45 84.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 4.5e-15 84.0 52 75.0
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 3.8e-14 80.9 57 63.2
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 6.5e-14 80.1 56 69.6
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 8.5e-14 79.7 56 67.9
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-13 79.3 57 63.2
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-13 79.3 57 63.2
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 1.1e-13 79.3 55 67.3
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 1.4e-13 79.0 57 61.4
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 1.4e-13 79.0 55 58.2
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 2.5e-13 78.2 56 66.1
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 5.5e-13 77.0 56 60.7
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.4e-13 76.3 95 43.2
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.6e-12 75.5 53 64.2
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.6e-12 75.5 55 61.8
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 3.6e-12 74.3 55 67.3
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 3.9e-11 70.9 87 44.8
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 8.8e-11 69.7 57 61.4
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 5.7e-10 67.0 55 54.5
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 5.7e-10 67.0 39 74.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.8e-09 63.9 34 76.5
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.2e-09 63.2 31 83.9
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.1e-08 62.8 47 61.7
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.4e-08 62.4 31 83.9
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 2.4e-08 61.6 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 2.4e-08 61.6 28 96.4
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.2e-07 59.3 79 43.0
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.2e-07 59.3 79 43.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-07 58.9 31 74.2
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 2.6e-07 58.2 44 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 5.9e-07 57.0 57 49.1
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.0e-06 56.2 31 74.2
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 1.7e-06 55.5 35 71.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 3.8e-06 54.3 40 57.5
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 5.0e-06 53.9 34 64.7


User provided reference genes

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