Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 9.2e-259 896.3 448 100.0
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 6.4e-252 873.6 448 97.3
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 7.9e-242 840.1 451 94.0
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 6.5e-228 793.9 451 89.6
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.5e-216 756.1 455 84.6
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 9.7e-216 753.4 452 85.2
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 6.3e-215 750.7 454 84.6
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 1.1e-214 750.0 452 83.8
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.8e-214 749.2 453 83.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 5.3e-214 747.7 454 83.9
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 1.2e-213 746.5 457 82.5
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.0e-213 745.7 454 83.7
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 3.4e-213 745.0 457 82.1
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 3.4e-213 745.0 454 84.1
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 7.7e-213 743.8 473 80.5
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.7e-212 742.7 455 83.3
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.7e-212 742.7 447 84.1
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.2e-212 742.3 462 83.3
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.8e-212 741.5 454 83.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.4e-211 739.6 454 83.0
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 2.5e-211 738.8 460 83.0
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 2.5e-211 738.8 459 80.6
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.2e-211 738.0 454 83.0
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 4.2e-211 738.0 457 81.2
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.6e-210 736.1 457 83.2
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.6e-210 736.1 455 82.2
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 2.1e-210 735.7 457 82.9
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 3.6e-210 734.9 453 82.6
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 3.6e-210 734.9 455 82.6
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 3.6e-210 734.9 450 82.9
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 4.7e-210 734.6 473 80.1
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 6.1e-210 734.2 457 81.0
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 7.9e-210 733.8 453 82.6
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.8e-209 732.6 455 81.5
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.9e-209 731.5 473 79.1
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.1e-208 729.9 456 82.0
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.5e-208 729.6 452 80.5
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 4.4e-208 728.0 451 81.2
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 5.7e-208 727.6 457 79.9
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 9.7e-208 726.9 472 79.2
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 1.3e-207 726.5 452 79.9
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.8e-207 725.3 452 80.5
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.4e-206 723.0 453 81.0
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 2.4e-206 722.2 451 80.5
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 5.3e-206 721.1 457 80.5
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.2e-205 719.9 457 79.6
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.5e-205 719.5 452 79.9
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.5e-205 719.5 450 81.1
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.5e-205 719.5 452 79.6
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 2.0e-205 719.2 457 79.6
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 2.6e-205 718.8 446 81.2
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 2.6e-205 718.8 452 80.1
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 2.6e-205 718.8 453 80.1
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 3.4e-205 718.4 450 80.9
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 5.9e-205 717.6 461 79.8
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.3e-204 716.5 446 80.9
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 2.2e-204 715.7 451 80.0
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 5.0e-204 714.5 451 80.0
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 6.5e-204 714.1 461 79.6
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 6.5e-204 714.1 447 80.5
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.1e-203 713.4 454 81.1
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.4e-203 713.0 454 79.1
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.5e-203 712.2 413 85.7
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 3.2e-203 711.8 452 78.8
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 7.2e-203 710.7 457 79.2
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 9.4e-203 710.3 413 85.5
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 3.6e-202 708.4 459 78.2
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 4.7e-202 708.0 452 79.9
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 1.0e-201 706.8 452 79.9
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.8e-201 706.1 412 84.5
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 6.7e-201 704.1 518 73.0
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 4.4e-200 701.4 416 83.4
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 7.4e-200 700.7 458 78.4
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 3.7e-199 698.4 453 78.1
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.2e-197 693.3 457 77.5
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 3.5e-197 691.8 415 84.1
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 7.7e-197 690.6 448 77.2
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.2e-192 676.8 425 79.5
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 2.0e-192 676.0 362 91.4
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 4.8e-191 671.4 397 84.6
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 7.0e-190 667.5 462 75.3
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.5e-189 665.2 357 91.9
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.5e-187 659.8 454 76.4
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 2.5e-187 659.1 446 75.8
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.2e-186 656.8 455 75.2
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.6e-186 656.4 454 75.8
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.1e-182 642.1 401 81.3
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.0e-181 639.4 370 84.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.9e-179 632.9 454 75.1
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 2.8e-178 629.0 393 78.1
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.4e-174 616.7 332 91.6
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 3.7e-167 592.0 332 87.0
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.2e-165 587.0 381 72.7
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 2.7e-165 585.9 402 71.4
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 8.0e-162 574.3 422 67.3
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 7.8e-157 557.8 351 80.6
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.0e-156 557.4 384 77.1
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.3e-155 551.2 358 78.5
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.6e-154 548.9 411 70.8
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 6.8e-153 544.7 380 68.7
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.5e-152 543.5 296 90.9
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 4.4e-144 515.4 279 90.0
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 3.1e-137 492.7 404 61.9
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 9.9e-136 487.6 280 84.6
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 4.3e-131 472.2 313 79.6
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.4e-129 467.2 403 64.0
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.3e-129 465.3 320 75.0
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.9e-126 456.8 253 88.5
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.9e-126 456.8 253 88.5
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.6e-125 453.8 332 72.3
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.3e-124 450.7 404 61.9
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 5.8e-112 408.7 409 50.1
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 1.4e-92 344.4 242 76.0
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.0e-76 291.6 320 46.9
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 6.6e-63 245.7 361 41.0
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.4e-57 228.0 403 36.5
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 5.6e-54 216.1 380 36.3
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.4e-49 200.7 117 84.6
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.4e-49 200.7 341 35.8
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 4.6e-48 196.4 349 34.4
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 5.6e-46 189.5 147 67.3
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 8.0e-45 185.7 102 85.3
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 8.9e-44 182.2 100 89.0
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 6.4e-42 176.0 363 32.0
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 5.1e-39 166.4 150 60.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.1e-36 158.7 96 85.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 1.1e-20 105.5 51 88.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.9e-15 87.0 45 100.0
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.4e-12 77.8 101 47.5
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 4.6e-08 63.5 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 7.9e-08 62.8 42 76.2
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 3.0e-07 60.8 150 28.0


User provided reference genes

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