Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 2.4e-78 295.8 195 100.0
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 6.6e-60 234.6 195 87.7
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 1.1e-41 174.1 186 72.6
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 4.4e-32 142.1 187 62.0
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 4.9e-31 138.7 176 59.7
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 4.9e-31 138.7 176 59.7
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 2.1e-18 96.7 161 44.1
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 3.4e-16 89.4 163 42.9
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 7.6e-16 88.2 166 41.0
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 2.9e-15 86.3 155 43.9
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 2.9e-15 86.3 174 44.3
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 2.9e-15 86.3 175 44.0
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 1.1e-14 84.3 170 37.6
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 4.2e-14 82.4 166 40.4
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 5.5e-14 82.0 171 37.4
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 2.7e-13 79.7 162 35.8
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 3.5e-13 79.3 178 48.3
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 1.3e-12 77.4 170 42.4
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 1.3e-12 77.4 177 40.7
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 3.9e-12 75.9 157 36.9
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 5.1e-12 75.5 184 38.6
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 8.7e-12 74.7 207 39.6
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 8.7e-12 74.7 165 50.9
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 1.5e-11 73.9 179 43.6
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 1.9e-11 73.6 177 50.8
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 1.9e-11 73.6 177 35.6
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 2.5e-11 73.2 184 37.0
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 3.3e-11 72.8 190 28.4
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 5.6e-11 72.0 173 35.3
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 5.6e-11 72.0 160 35.6
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 5.6e-11 72.0 179 43.0
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 7.4e-11 71.6 164 36.0
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 9.6e-11 71.2 162 35.8
Psat1g077160 Pisum sativum HOM05D007804 ORTHO05D009828 1.3e-10 70.9 186 46.2
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 2.8e-10 69.7 160 41.2
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 2.8e-10 69.7 159 37.7
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 8.2e-10 68.2 161 37.3
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 1.4e-09 67.4 203 49.3
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 1.8e-09 67.0 171 32.7
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 6.9e-09 65.1 149 36.9
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 9.0e-09 64.7 135 34.8
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 9.0e-09 64.7 135 34.8
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 1.2e-08 64.3 135 34.8
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 1.5e-08 63.9 178 33.7
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 2.0e-08 63.5 166 33.7
Oeu027756.1 Olea europaea HOM05D007804 ORTHO05D009828 2.0e-08 63.5 164 36.0
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 3.4e-08 62.8 184 29.9
Lsat_1_v5_gn_4_180340 Lactuca sativa HOM05D007804 ORTHO05D009828 3.4e-08 62.8 163 35.6
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 3.4e-08 62.8 171 31.0
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 4.5e-08 62.4 193 31.6
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 4.5e-08 62.4 135 33.3
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 4.5e-08 62.4 174 30.5
MSTRG.23968 Avicennia marina HOM05D007804 ORTHO05D009828 7.6e-08 61.6 166 34.9
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 7.6e-08 61.6 191 30.4
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 7.6e-08 61.6 181 39.2
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 1.0e-07 61.2 158 41.1
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 1.3e-07 60.8 178 33.7
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 1.3e-07 60.8 169 40.2
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 1.7e-07 60.5 185 28.6
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 2.2e-07 60.1 172 32.0
unitig_899.g15501 Utricularia gibba HOM05D007804 ORTHO05D009828 2.9e-07 59.7 155 34.2
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 3.8e-07 59.3 170 32.4
SGA_v2.0_scaffold135G34801 Striga asiatica HOM05D007804 ORTHO05D009828 4.9e-07 58.9 154 33.8
SalBow1G7839 Salvia bowleyana HOM05D007804 ORTHO05D009828 6.5e-07 58.5 154 31.2
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 8.4e-07 58.2 206 29.1
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 1.1e-06 57.8 196 29.1
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 1.1e-06 57.8 196 29.1
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 1.1e-06 57.8 196 29.1
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 1.9e-06 57.0 176 35.8
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 1.9e-06 57.0 176 36.9
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 2.5e-06 56.6 193 31.6
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 2.5e-06 56.6 164 33.5
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 7.1e-06 55.1 211 28.4
Oeu017303.1 Olea europaea HOM05D007804 ORTHO05D009828 9.3e-06 54.7 148 34.5


User provided reference genes

Program Settings