Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 5.1e-216 754.2 399 100.0
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.4e-205 718.8 399 95.5
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.7e-201 705.3 399 93.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 6.2e-190 667.5 400 88.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 7.9e-185 650.6 400 86.0
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 8.4e-171 604.0 401 79.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.5e-167 593.2 401 76.1
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.6e-166 589.7 401 74.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 1.6e-166 589.7 401 75.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.2e-166 589.3 401 73.1
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.7e-166 588.6 401 75.1
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.7e-166 588.6 401 75.1
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 4.1e-165 585.1 402 74.4
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 5.3e-165 584.7 401 75.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.9e-165 584.3 401 76.6
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.0e-164 582.8 401 73.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 1.0e-163 580.5 401 72.6
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.2e-163 579.3 400 73.0
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.8e-163 578.6 401 73.8
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.8e-163 578.6 402 72.6
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 6.5e-163 577.8 402 72.1
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 6.5e-163 577.8 402 72.1
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.9e-162 576.2 401 72.1
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.5e-162 575.9 401 74.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.5e-162 575.9 401 72.1
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 3.2e-162 575.5 401 73.8
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 9.4e-162 573.9 401 70.8
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.6e-161 573.2 416 71.9
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 7.9e-161 570.9 401 74.8
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.9e-160 568.5 402 74.1
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 5.1e-160 568.2 401 70.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 6.7e-160 567.8 404 71.8
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-159 567.0 405 71.6
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.5e-159 566.6 401 71.3
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.5e-159 566.6 401 72.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-159 566.2 405 71.6
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 2.0e-159 566.2 401 71.1
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.5e-159 565.8 402 71.1
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.5e-159 565.8 401 71.1
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 3.3e-159 565.5 402 70.9
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.3e-159 565.5 400 71.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 3.3e-159 565.5 390 72.6
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.3e-158 563.5 401 71.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 74.6
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 3.7e-158 562.0 403 71.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 3.7e-158 562.0 405 73.3
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 4.8e-158 561.6 403 72.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 4.8e-158 561.6 403 72.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.1e-157 560.5 403 72.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-157 560.1 402 70.4
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.4e-157 560.1 405 69.1
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 5.3e-157 558.1 401 71.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.6e-156 555.8 401 70.8
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.4e-156 555.4 446 64.8
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 4.5e-156 555.1 399 72.4
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 7.7e-156 554.3 401 69.6
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.0e-155 553.9 401 69.6
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-155 553.1 401 69.1
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.2e-155 552.7 401 74.1
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.2e-155 552.7 401 74.1
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.8e-155 552.0 405 67.9
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.8e-155 552.0 401 68.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.0e-155 551.6 404 68.1
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.5e-155 551.2 405 67.7
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.5e-154 549.3 402 70.1
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 5.5e-154 548.1 438 66.7
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 7.2e-154 547.7 401 70.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 9.4e-154 547.4 402 72.4
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-153 547.0 401 68.6
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.6e-153 546.6 406 69.5
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.7e-153 545.0 401 68.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.1e-153 544.7 405 67.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.9e-153 544.3 401 67.8
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 3.0e-152 542.3 402 69.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.9e-152 542.0 401 71.1
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 5.1e-152 541.6 401 70.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.1e-152 541.6 405 66.4
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.7e-152 541.2 403 68.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.3e-151 538.9 400 66.5
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 9.7e-151 537.3 401 67.3
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.8e-150 535.8 399 66.2
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.7e-150 535.4 401 68.6
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 8.2e-150 534.3 401 67.6
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 2.4e-149 532.7 401 67.1
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.4e-149 532.7 401 67.3
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.1e-149 532.3 401 67.1
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 5.3e-149 531.6 401 67.1
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 7.0e-149 531.2 401 67.1
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.2e-148 530.4 401 68.8
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-148 530.4 427 65.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.5e-148 530.0 401 66.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.5e-148 530.0 400 71.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.5e-148 528.5 401 71.6
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.7e-147 526.6 399 64.9
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.8e-147 525.4 401 66.6
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.5e-147 524.2 400 67.0
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.5e-146 522.7 401 66.8
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 2.5e-146 522.7 405 65.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.2e-146 521.2 400 66.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.6e-145 520.0 401 65.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.7e-145 519.2 403 66.3
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 8.0e-145 517.7 401 63.3
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.3e-144 516.2 406 65.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.3e-144 516.2 401 65.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.4e-143 511.9 449 61.2
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 7.4e-143 511.1 401 65.8
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.7e-142 510.0 402 64.7
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.8e-142 509.2 401 65.8
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.1e-141 507.3 401 68.6
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.1e-141 507.3 439 62.2
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.1e-141 505.4 401 64.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 3.5e-140 502.3 399 62.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 9.4e-138 494.2 406 65.3
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 7.0e-133 478.0 404 63.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 2.9e-131 472.6 403 63.0
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 6.5e-131 471.5 400 57.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.5e-130 469.5 410 61.5
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 8.8e-128 461.1 376 63.6
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.1e-125 454.1 333 69.1
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 9.5e-122 441.0 317 70.0
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.7e-118 429.1 514 47.1
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.7e-116 422.9 378 58.2
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 8.0e-113 411.4 435 54.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.6e-108 397.1 296 68.2
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 4.6e-108 395.6 438 53.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.0e-107 394.4 401 50.4
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.0e-107 392.1 403 52.4
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 5.0e-107 392.1 403 52.4
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 3.7e-102 375.9 405 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 7.6e-95 351.7 400 49.8
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 9.2e-93 344.7 403 48.9
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.4e-87 325.9 408 51.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.9e-75 286.2 404 44.8
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.9e-70 269.2 197 68.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.0e-67 261.5 357 43.4
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.5e-62 242.3 429 35.4
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.8e-57 226.1 302 42.7
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.1e-52 210.7 277 46.2
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.2e-46 190.7 149 67.1
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-42 177.9 145 73.8
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.6e-31 141.4 100 69.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 6.7e-27 125.9 95 72.6
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.0e-26 124.4 411 28.5
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-25 121.7 123 53.7
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 105 55.2
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.0e-22 112.1 83 73.5
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.4e-19 101.7 70 72.9
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 3.4e-18 97.1 445 27.4
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 4.4e-18 96.7 60 78.3
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.8e-17 93.2 68 60.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.1e-16 92.0 404 27.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.5e-13 81.6 61 59.0
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 5.2e-11 73.2 453 25.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.5e-10 71.6 79 57.0
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.6e-07 61.6 34 82.4
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.0e-07 61.2 86 44.2
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 8.6e-06 55.8 66 47.0


User provided reference genes

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