Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 2.3e-125 452.2 224 100.0
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 5.5e-95 351.3 187 92.5
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 3.0e-80 302.4 166 88.6
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 1.5e-76 290.0 184 79.3
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 9.5e-71 270.8 187 77.5
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 8.4e-51 204.5 183 59.6
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 4.2e-50 202.2 185 59.5
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 5.4e-50 201.8 194 58.2
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 5.4e-50 201.8 193 59.1
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 7.1e-50 201.4 183 60.7
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 1.2e-49 200.7 183 60.1
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 3.5e-49 199.1 194 57.2
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.6e-49 198.7 183 58.5
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 1.0e-48 197.6 183 57.9
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 1.0e-48 197.6 158 63.3
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.0e-48 197.6 193 58.0
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.7e-48 196.8 166 61.4
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 2.3e-48 196.4 183 58.5
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 3.0e-48 196.1 202 53.5
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 5.1e-48 195.3 191 56.5
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 5.1e-48 195.3 172 61.0
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 6.6e-48 194.9 187 58.3
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 8.7e-48 194.5 185 58.4
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.5e-47 193.7 183 57.4
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.9e-47 193.4 188 57.4
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.9e-47 193.4 143 65.7
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 3.3e-47 192.6 114 78.1
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.3e-47 192.2 182 57.7
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 4.3e-47 192.2 188 59.0
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 7.3e-47 191.4 194 55.2
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 1.3e-46 190.7 151 64.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.1e-46 188.0 150 62.7
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 1.4e-45 187.2 160 61.9
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 1.4e-45 187.2 191 55.0
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 1.4e-45 187.2 147 65.3
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 1.8e-45 186.8 184 54.3
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 4.0e-45 185.7 158 62.0
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 4.0e-45 185.7 164 59.8
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 1.5e-44 183.7 137 68.6
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 2.0e-44 183.3 144 65.3
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 3.4e-44 182.6 180 58.3
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 3.4e-44 182.6 146 63.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 3.4e-44 182.6 146 63.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 3.4e-44 182.6 146 63.0
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 4.4e-44 182.2 185 54.1
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 4.4e-44 182.2 151 62.3
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 7.6e-44 181.4 134 66.4
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 9.9e-44 181.0 185 55.1
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 1.3e-43 180.6 191 54.5
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 2.2e-43 179.9 104 79.8
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.2e-43 179.9 107 79.4
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 3.8e-43 179.1 104 78.8
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 1.1e-42 177.6 200 49.5
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 1.4e-42 177.2 187 55.1
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 3.2e-42 176.0 186 55.4
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 7.1e-42 174.9 185 51.4
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 9.3e-42 174.5 139 63.3
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 9.3e-42 174.5 153 59.5
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 9.3e-42 174.5 128 67.2
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 1.2e-41 174.1 185 49.7
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.7e-41 172.9 186 55.4
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.5e-41 172.6 92 87.0
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 4.6e-41 172.2 101 80.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 1.0e-40 171.0 123 67.5
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 1.7e-40 170.2 165 55.8
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 2.3e-40 169.9 152 58.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 6.6e-40 168.3 165 55.2
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 1.1e-39 167.5 109 69.7
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 3.3e-39 166.0 185 50.8
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.3e-39 166.0 106 70.8
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 4.3e-39 165.6 214 47.2
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 5.6e-39 165.2 162 51.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 5.6e-39 165.2 187 50.3
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 7.4e-39 164.9 122 66.4
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 2.1e-38 163.3 193 48.7
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 2.1e-38 163.3 100 75.0
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 2.8e-38 162.9 104 72.1
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 3.6e-38 162.5 150 54.0
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 6.2e-38 161.8 149 55.7
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 1.8e-37 160.2 127 64.6
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 1.8e-37 160.2 185 49.2
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 2.4e-37 159.8 184 50.0
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 2.4e-37 159.8 139 59.7
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 3.1e-37 159.5 103 69.9
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 3.1e-37 159.5 99 76.8
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 5.3e-37 158.7 190 49.5
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 9.0e-37 157.9 125 64.0
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 9.0e-37 157.9 125 64.0
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 9.0e-37 157.9 125 64.0
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 9.0e-37 157.9 135 61.5
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 9.0e-37 157.9 134 61.9
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 1.5e-36 157.1 132 60.6
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 2.0e-36 156.8 187 49.2
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 3.4e-36 156.0 207 46.9
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 3.4e-36 156.0 99 74.7
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.4e-36 156.0 99 74.7
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 3.4e-36 156.0 99 74.7
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 5.8e-36 155.2 99 73.7
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 9.9e-36 154.5 93 76.3
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 9.9e-36 154.5 104 69.2
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.3e-35 154.1 125 61.6
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.3e-35 154.1 183 48.1
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 1.7e-35 153.7 124 62.1
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 2.2e-35 153.3 84 84.5
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 4.9e-35 152.1 115 65.2
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 6.4e-35 151.8 99 70.7
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.4e-35 151.8 99 70.7
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.4e-35 151.8 99 70.7
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 1.4e-34 150.6 192 46.4
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.9e-34 150.2 99 69.7
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 9.3e-34 147.9 99 69.7
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.7e-33 146.4 99 68.7
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.9e-31 140.2 117 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 5.6e-31 138.7 155 44.5
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 1.1e-29 134.4 75 77.3
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 6.9e-29 131.7 97 60.8
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 9.0e-29 131.3 91 64.8
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 9.3e-26 121.3 86 66.3
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-24 116.7 127 50.4
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 1.9e-23 113.6 88 58.0
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.5e-23 113.2 96 59.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.1e-21 107.8 108 50.0
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 6.9e-21 105.1 72 63.9
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 8.5e-19 98.2 75 58.7
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.2e-18 96.3 126 46.8
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 7.2e-18 95.1 89 58.4
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 1.2e-17 94.4 73 56.2
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 2.7e-17 93.2 74 59.5
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.7e-16 88.6 116 46.6
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 6.3e-14 82.0 91 51.6
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 5.3e-13 79.0 72 48.6
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 3.8e-11 72.8 71 43.7
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 1.9e-10 70.5 90 40.0
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 1.6e-09 67.4 41 73.2
MBI05_g31458_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 3.6e-09 66.2 97 44.3
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 1.0e-08 64.7 62 46.8
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 9.7e-07 58.2 60 41.7
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 2.2e-06 57.0 71 39.4
A02p18230 Brassica napus HOM05D002826 ORTHO05D003105 8.2e-06 55.1 96 31.2
A06p19010 Brassica napus HOM05D002826 ORTHO05D003105 8.2e-06 55.1 96 31.2
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 8.2e-06 55.1 54 40.7


User provided reference genes

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