Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.3e-131 472.2 243 100.0
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.2e-108 396.7 257 84.0
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 5.8e-106 387.9 235 86.4
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 7.6e-106 387.5 241 86.3
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.9e-104 382.9 241 85.1
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.5e-101 373.2 241 82.2
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.3e-69 265.8 239 61.5
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 7.4e-69 264.6 246 58.9
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.7e-68 262.3 246 60.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 5.3e-67 258.5 247 56.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.5e-66 256.9 248 59.3
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 3.4e-66 255.8 247 59.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.5e-66 255.4 247 58.3
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 5.9e-66 255.0 242 58.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.9e-66 255.0 242 57.9
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 6.5e-65 251.5 242 56.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 2.5e-64 249.6 267 54.7
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.2e-64 248.8 242 57.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 9.4e-64 247.7 243 57.2
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.2e-63 247.3 247 58.3
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.6e-63 246.9 247 57.5
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 2.7e-63 246.1 243 56.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 6.1e-63 245.0 247 55.9
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 6.1e-63 245.0 289 50.5
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.4e-62 243.8 242 57.9
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.8e-62 243.4 241 56.8
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 6.7e-62 241.5 224 58.5
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 8.8e-62 241.1 218 58.3
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.8e-62 241.1 247 54.3
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 8.8e-62 241.1 209 62.7
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.1e-61 240.7 224 58.5
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.3e-61 239.2 248 56.9
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 4.3e-61 238.8 247 54.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 5.7e-61 238.4 243 55.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 7.4e-61 238.0 242 53.3
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 9.7e-61 237.7 224 58.0
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 9.7e-61 237.7 239 56.5
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.3e-60 237.3 240 55.8
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.2e-60 234.6 247 53.8
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 3.1e-59 232.6 243 55.1
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 9.1e-59 231.1 249 52.6
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.2e-58 230.7 248 56.9
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.2e-58 230.7 247 55.1
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 9.4e-56 221.1 243 53.9
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.2e-55 220.7 242 57.0
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.8e-54 216.9 172 72.7
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.3e-54 216.5 245 52.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.0e-54 216.1 247 51.8
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 3.9e-54 215.7 244 52.5
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 6.7e-54 214.9 241 51.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 8.8e-54 214.5 240 51.7
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 8.8e-54 214.5 243 51.4
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 2.0e-53 213.4 243 50.2
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 4.4e-53 212.2 264 48.1
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 7.4e-53 211.5 211 50.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.3e-52 210.7 244 51.2
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.7e-52 210.3 250 48.8
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 2.2e-52 209.9 242 55.0
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.7e-52 209.1 187 56.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 6.3e-52 208.4 239 52.3
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-52 208.0 208 54.8
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.1e-51 207.6 211 50.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-51 206.5 208 53.8
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 3.1e-51 206.1 241 46.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.1e-51 205.7 242 50.4
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 4.1e-51 205.7 243 50.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.1e-51 205.7 236 49.6
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.1e-51 205.7 236 49.6
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 4.1e-51 205.7 200 55.0
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-51 205.3 206 53.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.1e-51 204.5 207 54.1
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.5e-50 202.6 205 53.7
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-49 200.7 203 53.7
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.3e-49 200.7 203 53.7
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.3e-49 200.7 240 52.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.7e-49 200.3 236 49.6
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.2e-49 199.9 239 48.5
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.1e-48 197.6 205 59.0
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.5e-48 197.2 239 49.4
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.2e-48 196.1 237 48.9
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 7.2e-48 194.9 205 51.7
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.6e-47 193.7 240 47.5
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.7e-47 193.0 236 51.7
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.7e-47 192.2 247 47.8
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.1e-47 191.8 208 51.4
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 6.1e-47 191.8 231 48.9
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.0e-46 191.0 241 46.5
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-46 190.7 208 51.0
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.2e-46 188.7 226 49.6
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 8.8e-46 188.0 239 47.7
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.5e-45 187.2 243 46.9
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.6e-45 186.4 248 48.8
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 5.7e-45 185.3 242 46.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.3e-44 184.1 237 47.3
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.8e-44 183.0 260 48.1
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.8e-44 182.2 208 50.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.8e-43 180.3 244 45.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-42 177.6 209 49.8
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 7.7e-42 174.9 240 44.2
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 7.7e-42 174.9 174 58.0
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.9e-41 172.9 247 44.5
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 2.9e-41 172.9 243 44.9
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.8e-41 172.6 247 49.0
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.8e-41 172.6 239 44.8
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-40 171.0 211 46.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 2.5e-40 169.9 236 45.3
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.7e-39 166.4 245 44.5
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 4.7e-39 165.6 239 46.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 6.1e-39 165.2 246 45.5
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.0e-38 164.5 236 45.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 5.2e-38 162.2 237 43.0
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.6e-37 159.8 235 45.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 5.7e-37 158.7 236 46.6
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 7.5e-37 158.3 173 47.4
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.2e-36 156.8 255 43.5
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.7e-36 156.0 173 55.5
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.8e-36 155.6 243 42.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 7.0e-35 151.8 200 45.5
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 9.1e-35 151.4 239 43.1
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.6e-34 150.6 125 60.8
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-33 147.9 197 44.7
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-33 147.5 178 46.6
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 5.0e-33 145.6 191 50.3
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.5e-33 144.8 243 40.7
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 9.4e-32 141.4 247 42.5
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 8.0e-31 138.3 240 37.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.4e-30 137.5 241 41.1
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 6.8e-30 135.2 238 40.8
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 8.3e-28 128.3 113 56.6
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.4e-27 126.7 239 38.1
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.0e-27 125.2 105 64.8
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 4.5e-26 122.5 208 38.0
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 5.0e-25 119.0 186 41.9
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.6e-25 118.2 245 36.3
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-24 116.7 181 42.5
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 7.2e-24 115.2 217 35.9
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.1e-23 113.6 165 42.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.3e-17 93.6 196 35.2
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.0e-17 92.4 148 41.2
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 3.3e-16 89.7 157 40.1
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 6.1e-15 85.5 156 38.5
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-13 80.5 93 46.2
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 2.6e-13 80.1 235 30.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-13 79.7 88 48.9
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.7e-12 77.4 164 31.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-12 77.0 88 47.7
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 4.1e-11 72.8 93 43.0
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 4.1e-11 72.8 55 56.4
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 5.4e-11 72.4 104 44.2
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.7e-10 70.1 47 74.5
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.6e-10 69.3 43 79.1
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.3e-09 67.8 61 55.7
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.9e-09 66.2 103 40.8
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.0e-09 65.9 118 34.7
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 4.3e-08 62.8 65 50.8
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-08 62.0 65 50.8


User provided reference genes

Program Settings