Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 3.8e-76 288.1 149 100.0
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 4.4e-48 194.9 114 94.7
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.3e-47 193.4 114 93.0
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 2.9e-39 165.6 114 81.6
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 5.1e-28 128.3 124 64.5
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 5.6e-27 124.8 138 58.7
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 9.0e-25 117.5 97 70.1
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.6e-24 115.9 84 81.0
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.6e-24 115.9 112 64.3
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.3e-23 113.6 95 71.6
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.7e-23 113.2 83 77.1
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 1.7e-23 113.2 114 57.0
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 2.2e-23 112.8 89 76.4
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 3.8e-23 112.1 86 76.7
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.8e-23 112.1 125 58.4
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 6.4e-23 111.3 112 68.8
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 8.4e-23 110.9 75 80.0
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 1.9e-22 109.8 77 79.2
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 2.4e-22 109.4 115 60.9
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 3.2e-22 109.0 112 57.1
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 5.4e-22 108.2 115 61.7
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 7.1e-22 107.8 77 77.9
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.2e-21 107.1 77 77.9
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.1e-21 106.3 116 62.9
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.1e-21 106.3 116 62.9
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.7e-21 105.9 74 78.4
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 6.0e-21 104.8 106 61.3
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 6.0e-21 104.8 98 59.2
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 6.0e-21 104.8 80 77.5
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 7.8e-21 104.4 125 60.8
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 1.0e-20 104.0 81 74.1
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.0e-20 104.0 80 70.0
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 1.3e-20 103.6 77 76.6
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.3e-20 103.6 132 53.8
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 3.0e-20 102.4 113 57.5
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 3.0e-20 102.4 74 77.0
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 6.6e-20 101.3 105 57.1
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 6.6e-20 101.3 128 53.1
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 8.7e-20 100.9 118 56.8
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.9e-19 99.8 79 70.9
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.9e-19 99.8 110 59.1
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 2.5e-19 99.4 97 56.7
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 2.5e-19 99.4 118 50.8
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 2.5e-19 99.4 73 76.7
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 5.6e-19 98.2 131 55.7
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 5.6e-19 98.2 111 58.6
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 1.6e-18 96.7 77 72.7
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 2.1e-18 96.3 76 71.1
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 3.6e-18 95.5 86 66.3
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.8e-18 95.1 93 62.4
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.8e-18 95.1 131 54.2
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 6.2e-18 94.7 125 56.0
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 6.2e-18 94.7 112 56.2
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 6.2e-18 94.7 77 72.7
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 8.1e-18 94.4 92 62.0
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 1.4e-17 93.6 77 68.8
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 1.4e-17 93.6 133 54.1
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.1e-17 92.4 110 56.4
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.1e-17 92.4 110 56.4
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 4.0e-17 92.0 65 73.8
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.5e-16 90.1 73 71.2
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.5e-16 90.1 74 70.3
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.5e-16 90.1 108 54.6
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 2.0e-16 89.7 67 79.1
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 2.0e-16 89.7 67 79.1
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 2.6e-16 89.4 119 54.6
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 2.6e-16 89.4 75 64.0
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 3.4e-16 89.0 121 44.6
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 5.8e-16 88.2 61 72.1
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 7.6e-16 87.8 99 59.6
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 9.9e-16 87.4 112 55.4
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 9.9e-16 87.4 120 50.0
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.3e-15 87.0 78 67.9
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.3e-15 87.0 123 51.2
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 1.7e-15 86.7 94 56.4
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 3.8e-15 85.5 90 63.3
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 6.4e-15 84.7 82 65.9
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 4.2e-14 82.0 121 50.4
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 4.2e-14 82.0 121 50.4
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 3.9e-12 75.5 59 78.0
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 8.7e-12 74.3 59 76.3
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 8.7e-12 74.3 104 41.3
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 2.5e-11 72.8 105 51.4
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 2.1e-10 69.7 89 49.4
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 3.7e-10 68.9 92 51.1
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 8.1e-10 67.8 74 54.1
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 3.1e-09 65.9 65 63.1
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 5.3e-09 65.1 46 65.2
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 9.0e-09 64.3 78 55.1
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 9.9e-08 60.8 79 43.0
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 2.2e-07 59.7 95 47.4
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-06 57.4 44 56.8


User provided reference genes

Program Settings