Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 0.0e+00 1215.7 639 100.0
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 0.0e+00 1215.7 639 100.0
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 3.5e-296 1021.1 633 88.3
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.0e-282 974.2 648 81.5
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-264 916.4 697 75.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-250 869.8 454 100.0
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 5.0e-250 867.8 646 74.3
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 6.8e-247 857.4 644 73.6
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 3.6e-139 499.6 502 56.4
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 3.0e-138 496.5 508 56.3
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 8.8e-138 495.0 627 48.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.5e-132 477.6 535 51.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 5.6e-132 475.7 500 54.0
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.6e-131 473.0 501 54.1
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 7.5e-129 465.3 597 47.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.2e-128 463.8 597 47.1
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.9e-128 463.4 482 54.6
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.7e-128 463.0 597 47.1
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.1e-127 461.5 603 46.4
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 5.4e-127 459.1 706 42.5
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-126 458.0 235 100.0
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.0e-126 457.2 676 44.4
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.7e-126 456.8 479 53.7
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 8.6e-125 451.8 476 54.2
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.5e-124 451.1 481 52.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.9e-124 450.7 506 51.6
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.5e-124 450.3 611 46.6
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.3e-124 449.9 611 46.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 3.6e-123 446.4 480 52.5
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.2e-123 445.7 594 46.8
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 8.0e-123 445.3 570 49.5
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.0e-122 444.9 533 48.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.0e-122 444.9 485 50.9
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.0e-122 443.0 486 52.1
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.0e-122 443.0 672 43.5
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 5.2e-122 442.6 694 41.2
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.2e-121 441.4 582 46.7
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-120 438.0 659 42.8
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.2e-120 437.2 703 40.8
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.9e-120 436.0 677 42.2
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.4e-120 435.6 700 41.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.2e-119 433.3 556 46.4
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 5.4e-119 432.6 719 40.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.6e-118 431.0 592 44.6
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 6.6e-117 425.6 620 45.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.1e-116 424.9 669 40.2
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.4e-114 417.9 699 42.1
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.8e-114 417.5 711 40.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 3.1e-114 416.8 696 40.9
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 4.0e-114 416.4 633 41.9
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 6.8e-114 415.6 682 41.6
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.0e-113 414.1 701 41.1
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 2.6e-113 413.7 661 41.1
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.4e-113 413.3 500 50.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 7.5e-113 412.1 556 45.1
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.7e-112 411.0 662 43.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.7e-112 409.8 474 49.6
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-111 407.9 694 40.6
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.9e-111 407.5 626 42.2
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.4e-111 406.0 481 48.4
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.1e-110 404.1 720 40.1
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.7e-109 401.0 688 41.1
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 3.9e-109 399.8 554 45.1
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 5.1e-109 399.4 474 48.1
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.1e-108 398.3 474 47.9
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 1.5e-108 397.9 479 48.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.5e-108 397.9 490 48.4
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 2.5e-108 397.1 664 40.4
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 4.3e-108 396.4 473 47.8
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 9.5e-108 395.2 485 45.8
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 4.7e-107 392.9 686 39.8
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.9e-106 388.7 492 46.5
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.5e-105 387.9 695 37.4
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.5e-105 387.9 509 44.4
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 2.0e-105 387.5 686 38.5
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 3.4e-105 386.7 483 47.6
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 3.4e-105 386.7 706 38.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.8e-105 386.0 593 40.8
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 9.9e-105 385.2 663 39.8
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.7e-104 384.4 597 40.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 2.2e-104 384.0 557 42.9
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 2.2e-104 384.0 535 43.9
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 3.8e-104 383.3 681 38.8
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 6.4e-104 382.5 549 44.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 6.4e-104 382.5 448 48.9
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 8.4e-104 382.1 557 42.7
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-103 381.7 557 42.7
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-103 381.3 544 44.7
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-103 381.3 544 44.7
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.4e-103 381.3 535 43.9
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.2e-103 380.2 546 43.6
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.1e-103 379.8 609 43.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 5.4e-103 379.4 486 46.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 9.2e-103 378.6 644 39.9
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 4.6e-102 376.3 621 41.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.0e-101 373.6 489 46.8
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 3.9e-101 373.2 630 40.0
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 5.1e-101 372.9 595 40.7
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 5.1e-101 372.9 648 39.8
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 8.6e-101 372.1 536 42.5
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 7.3e-100 369.0 575 42.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.2e-99 368.2 703 37.6
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.3e-96 358.2 455 47.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.2e-96 357.5 658 40.7
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.3e-93 348.2 443 46.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.3e-93 348.2 708 36.3
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.3e-93 347.4 180 100.0
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 9.6e-92 342.0 442 45.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 6.2e-91 339.3 718 36.1
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-89 334.3 561 41.2
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.3e-88 331.6 552 39.7
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.2e-88 330.9 607 38.9
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.4e-87 327.4 431 46.2
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.1e-86 324.3 624 38.6
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 7.4e-84 315.8 362 48.9
CsaV3_5G035490 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-83 315.1 168 100.0
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.1e-83 312.4 399 47.1
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.1e-82 312.0 454 43.2
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.4e-82 310.8 652 38.0
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 9.0e-74 282.3 559 34.5
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.6e-73 280.8 559 34.5
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.4e-73 280.4 333 49.5
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-72 277.7 224 62.5
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 8.7e-69 265.8 494 36.6
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.9e-68 264.6 268 50.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.5e-65 255.0 485 36.5
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.0e-64 250.0 281 52.7
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.0e-57 228.0 513 34.7
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.7e-56 224.9 486 34.8
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.7e-56 224.9 486 34.8
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-51 208.8 510 31.4
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.5e-49 201.8 309 43.0
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.2e-48 198.0 506 33.4
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.3e-45 188.0 196 52.0
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.8e-43 180.3 575 30.4
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.7e-40 171.8 301 38.5
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 6.1e-38 163.3 236 43.6
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.0e-37 162.5 233 41.6
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.7e-35 154.1 345 35.4
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.0e-33 148.3 210 44.8
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 3.5e-33 147.5 136 60.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 2.1e-30 138.3 216 42.6
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 8.0e-30 136.3 430 30.9
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.0e-29 134.4 300 32.3
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.7e-27 128.6 133 51.9
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.1e-26 122.9 99 59.6
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.2e-25 122.5 126 56.3
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 5.9e-25 120.2 222 41.0
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.5e-23 114.8 206 40.8
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.9e-15 88.6 60 73.3
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 7.3e-15 86.7 288 31.9
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.1e-14 85.1 157 36.3
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 6.8e-13 80.1 246 32.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 2.0e-12 78.6 102 45.1
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 2.6e-12 78.2 58 62.1
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.4e-12 77.8 76 55.3
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.5e-12 76.6 134 42.5
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.4e-10 70.5 75 50.7
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 7.8e-09 66.6 55 56.4
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 9.5e-07 59.7 253 26.9


User provided reference genes

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