Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 1.8e-105 386.0 195 100.0
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 8.5e-100 367.1 196 95.4
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 5.7e-88 327.8 197 84.8
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.2e-61 240.4 166 69.9
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.0e-61 239.6 195 67.7
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 1.0e-60 237.3 181 68.0
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.5e-56 223.4 226 56.6
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 9.8e-56 220.7 213 59.6
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.2e-55 219.5 154 72.7
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 4.9e-55 218.4 193 62.7
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 6.4e-55 218.0 162 68.5
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 1.1e-54 217.2 164 69.5
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.1e-54 217.2 197 58.9
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.1e-54 217.2 197 58.9
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 1.1e-54 217.2 176 68.2
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.9e-54 216.5 168 67.9
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 9.2e-54 214.2 187 61.5
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.2e-53 213.8 160 68.1
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 1.6e-53 213.4 211 57.3
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 4.6e-53 211.8 212 57.5
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 6.0e-53 211.5 196 59.2
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 1.0e-52 210.7 201 59.2
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.3e-52 210.3 183 62.3
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 1.7e-52 209.9 205 57.6
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.1e-51 207.2 204 59.3
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.5e-51 206.8 192 58.9
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 2.5e-51 206.1 153 66.7
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 9.5e-51 204.1 169 60.4
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 9.5e-51 204.1 185 61.1
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 9.5e-51 204.1 182 58.8
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.2e-50 203.8 188 58.5
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.6e-50 203.4 204 59.3
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.6e-50 203.4 171 63.7
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 2.8e-50 202.6 161 64.6
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.1e-49 200.7 200 57.5
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 1.8e-49 199.9 226 51.8
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 4.0e-49 198.7 185 60.5
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 6.8e-49 198.0 196 56.6
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 6.8e-49 198.0 174 62.6
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 8.9e-49 197.6 189 56.1
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.5e-48 196.8 168 61.9
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 1.5e-48 196.8 186 59.7
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.6e-48 196.1 210 54.8
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 4.4e-48 195.3 184 58.7
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 7.5e-48 194.5 172 58.7
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 7.5e-48 194.5 210 53.8
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 2.2e-47 193.0 164 61.6
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 2.4e-46 189.5 176 58.5
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 2.4e-46 189.5 201 54.2
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 2.4e-46 189.5 172 58.1
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 5.4e-46 188.3 185 54.6
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 7.1e-46 188.0 172 58.1
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 7.1e-46 188.0 174 58.6
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 7.1e-46 188.0 198 54.5
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.1e-45 186.4 203 53.7
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 7.8e-45 184.5 162 59.9
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 7.8e-45 184.5 165 61.2
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 1.0e-44 184.1 229 49.3
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.3e-44 183.7 168 60.1
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.3e-44 183.0 164 61.0
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 5.1e-44 181.8 178 56.7
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 6.6e-44 181.4 188 55.9
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 8.6e-44 181.0 200 53.0
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 1.5e-43 180.3 140 67.1
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 3.3e-43 179.1 170 55.3
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 3.3e-43 179.1 152 65.8
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 4.3e-43 178.7 161 58.4
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 4.3e-43 178.7 211 48.8
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 5.6e-43 178.3 173 58.4
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 5.6e-43 178.3 173 58.4
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 9.5e-43 177.6 172 57.0
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.2e-42 177.2 155 60.0
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.2e-42 177.2 179 55.3
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.1e-42 176.4 173 57.8
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.1e-42 176.4 173 57.8
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 4.7e-42 175.3 212 48.6
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 8.1e-42 174.5 173 57.2
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.4e-41 173.7 165 58.2
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 2.4e-41 172.9 164 56.7
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 3.1e-41 172.6 165 55.8
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 6.8e-41 171.4 168 54.2
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.2e-40 170.6 154 61.0
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 1.2e-40 170.6 213 46.9
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 1.5e-40 170.2 199 49.2
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 2.0e-40 169.9 154 62.3
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 2.6e-40 169.5 168 56.5
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 7.6e-40 167.9 143 63.6
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.3e-39 167.2 162 54.9
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.7e-39 166.8 148 58.8
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.2e-39 166.4 197 50.8
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.1e-38 164.1 154 56.5
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 2.4e-38 162.9 174 54.0
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 7.1e-38 161.4 109 71.6
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 9.2e-38 161.0 171 52.6
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.6e-37 160.2 182 52.2
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 4.6e-37 158.7 118 66.9
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 6.0e-37 158.3 124 63.7
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 7.8e-37 157.9 216 43.1
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 1.0e-36 157.5 158 52.5
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 6.6e-36 154.8 169 52.1
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 8.6e-36 154.5 184 52.2
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.1e-35 154.1 144 60.4
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 2.5e-35 152.9 106 66.0
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 6.2e-34 148.3 106 67.9
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 6.9e-33 144.8 87 73.6
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.3e-31 140.6 135 57.8
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 8.4e-31 137.9 156 52.6
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 1.1e-27 127.5 125 53.6
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 6.2e-26 121.7 167 46.1
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 4.9e-23 112.1 101 51.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 6.4e-23 111.7 110 51.8
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 4.2e-22 109.0 108 49.1
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 4.0e-17 92.4 143 41.3
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.5e-16 90.5 104 51.0
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.5e-16 89.0 126 44.4
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 4.2e-14 82.4 72 51.4
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.1e-06 57.8 42 64.3


User provided reference genes

Program Settings