Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 1.5e-200 702.6 352 100.0
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 4.8e-170 601.3 314 95.9
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 7.5e-155 550.8 314 88.2
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.3e-151 540.0 315 87.9
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.7e-130 469.9 306 77.1
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 2.9e-130 469.2 305 75.1
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 6.4e-130 468.0 306 76.8
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 8.3e-130 467.6 305 75.4
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 2.4e-129 466.1 305 74.1
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 4.1e-129 465.3 306 75.5
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 5.4e-129 464.9 305 74.8
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 9.2e-129 464.2 306 75.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 9.2e-129 464.2 306 76.5
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.7e-128 462.6 305 74.8
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 4.6e-128 461.8 306 74.8
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 6.0e-128 461.5 307 75.2
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 6.0e-128 461.5 305 74.1
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.0e-127 460.7 305 74.1
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 3.0e-127 459.1 306 73.5
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 5.1e-127 458.4 306 74.5
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 6.6e-127 458.0 306 75.8
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 1.1e-126 457.2 305 73.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 1.9e-126 456.4 306 74.5
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 4.3e-126 455.3 306 74.8
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 5.6e-126 454.9 306 74.2
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 9.5e-126 454.1 306 74.5
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.6e-125 453.4 306 73.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 4.7e-125 451.8 304 73.4
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 8.1e-125 451.1 305 72.8
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 8.1e-125 451.1 305 72.5
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 8.1e-125 451.1 308 74.4
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.1e-124 450.7 305 72.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.1e-124 450.7 305 71.5
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.8e-124 449.9 314 73.9
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.8e-124 449.9 305 72.1
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 5.2e-124 448.4 305 73.8
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 6.8e-124 448.0 309 72.8
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 6.8e-124 448.0 305 71.5
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 8.9e-124 447.6 310 71.6
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.2e-123 447.2 305 72.5
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.2e-123 447.2 306 72.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 1.2e-123 447.2 306 73.9
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.5e-123 446.8 306 73.5
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 1.5e-123 446.8 305 70.8
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 7.6e-123 444.5 305 71.1
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 9.9e-123 444.1 306 72.5
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 9.9e-123 444.1 305 72.5
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 1.3e-122 443.7 304 72.4
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.2e-122 443.0 305 71.1
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.2e-122 443.0 305 72.5
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 2.9e-122 442.6 313 70.9
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.7e-122 442.2 305 70.8
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.9e-121 439.9 307 69.1
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-121 439.9 305 71.8
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.4e-121 439.5 305 71.8
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 5.4e-121 438.3 306 69.3
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 2.7e-120 436.0 306 70.6
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.7e-120 436.0 302 70.5
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 3.5e-120 435.6 305 69.5
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 4.6e-120 435.3 314 66.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 6.0e-120 434.9 321 68.5
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.0e-119 434.1 305 69.5
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 1.9e-118 429.9 305 68.9
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 9.6e-118 427.6 272 75.7
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.6e-117 426.8 385 58.7
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 2.1e-117 426.4 305 68.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.6e-117 425.6 283 72.4
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 6.2e-117 424.9 305 68.9
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 8.1e-117 424.5 307 67.1
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 8.1e-117 424.5 305 67.9
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.4e-116 423.7 305 69.2
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 3.1e-116 422.5 305 68.5
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 5.2e-116 421.8 305 68.2
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 6.8e-116 421.4 315 66.7
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.2e-115 420.6 337 62.0
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 2.0e-115 419.9 308 66.2
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 2.6e-115 419.5 304 67.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 2.6e-115 419.5 305 67.2
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 4.4e-115 418.7 308 65.9
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 4.4e-115 418.7 315 67.9
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 7.6e-115 417.9 308 66.2
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 9.9e-115 417.5 304 67.1
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.9e-115 417.5 307 66.1
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.9e-115 417.5 307 66.1
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 1.3e-114 417.2 324 65.1
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.3e-114 417.2 306 67.3
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.3e-114 417.2 306 67.3
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.7e-114 416.8 305 65.9
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 8.4e-114 414.5 350 62.0
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 2.4e-113 412.9 304 66.1
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.3e-113 411.0 308 68.5
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 9.3e-113 411.0 307 65.5
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.3e-111 407.1 305 66.2
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 5.8e-107 391.7 344 60.5
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 8.7e-103 377.9 297 64.6
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 5.6e-102 375.2 309 61.2
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 1.6e-101 373.6 285 68.4
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.2e-101 371.7 285 67.4
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.3e-98 364.0 245 73.1
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.3e-98 364.0 240 74.2
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.3e-98 364.0 305 61.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 1.9e-97 360.1 248 72.2
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.7e-93 345.9 241 68.9
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 6.9e-92 341.7 308 58.4
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 9.3e-89 331.3 304 57.6
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 2.8e-85 319.7 209 73.2
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 3.4e-83 312.8 304 55.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 3.8e-82 309.3 310 52.6
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 1.6e-77 293.9 228 62.7
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 8.2e-77 291.6 291 51.9
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 3.4e-75 286.2 299 52.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.0e-66 258.1 292 46.6
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.8e-55 220.7 148 75.7
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.5e-54 217.6 180 57.8
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.4e-52 211.1 146 74.7
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.4e-52 210.3 290 40.0
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.9e-50 203.4 319 39.5
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 6.1e-48 195.7 156 61.5
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.4e-39 167.9 184 53.8
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.3e-34 151.4 149 53.0
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.5e-33 147.9 149 53.7
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-33 146.0 95 73.7
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-31 141.4 96 71.9
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.8e-28 131.0 101 64.4
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.9e-17 94.4 67 73.1
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.8e-16 90.5 67 64.2
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.7e-16 89.7 67 64.2
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.1e-16 89.0 62 67.7
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.8e-15 87.8 57 71.9


User provided reference genes

Program Settings