Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 4.1e-105 384.8 204 100.0
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 4.3e-102 374.8 204 97.5
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 6.0e-96 354.4 210 91.0
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 4.6e-88 328.2 207 86.5
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 8.6e-79 297.4 204 81.4
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.7e-74 283.1 205 73.2
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.9e-73 279.6 201 73.6
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 2.4e-73 279.3 201 73.6
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 3.2e-73 278.9 207 72.0
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 4.2e-73 278.5 201 74.1
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 5.4e-73 278.1 212 71.7
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.2e-72 276.9 201 73.6
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 1.7e-71 273.1 201 71.6
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 3.9e-71 271.9 212 68.9
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 5.1e-71 271.6 206 71.4
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 5.1e-71 271.6 206 70.9
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 8.7e-71 270.8 208 69.2
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.5e-70 270.0 208 69.2
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 1.9e-70 269.6 216 68.1
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 3.3e-70 268.9 201 72.1
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 7.3e-70 267.7 208 68.3
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.3e-69 266.9 204 71.6
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-69 266.9 207 69.6
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.3e-69 266.9 199 72.4
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 2.1e-69 266.2 199 71.4
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 2.8e-69 265.8 208 66.8
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 4.8e-69 265.0 199 70.9
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 5.3e-68 261.5 208 68.8
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 5.3e-68 261.5 199 70.9
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 6.9e-68 261.2 199 70.9
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 9.0e-68 260.8 233 63.5
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 1.5e-67 260.0 207 68.6
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 1.5e-67 260.0 188 71.3
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 2.0e-67 259.6 212 68.4
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 4.4e-67 258.5 200 69.5
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 2.9e-66 255.8 212 65.1
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 2.9e-66 255.8 219 65.8
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.9e-66 255.8 228 64.5
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.9e-66 255.0 200 69.5
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 4.9e-66 255.0 221 64.7
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 6.4e-66 254.6 207 66.2
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 8.4e-66 254.2 200 67.0
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.1e-65 253.8 205 69.3
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 1.1e-65 253.8 202 69.3
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 1.1e-65 253.8 204 66.7
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 9.3e-65 250.8 206 65.0
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 7.9e-64 247.7 197 67.0
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 2.3e-63 246.1 217 61.3
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 2.3e-63 246.1 217 63.6
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 3.0e-63 245.7 217 60.8
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 5.1e-63 245.0 210 61.4
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 5.1e-63 245.0 210 62.9
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 6.6e-63 244.6 213 64.3
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 1.5e-62 243.4 222 61.7
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 4.3e-62 241.9 200 67.0
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 5.6e-62 241.5 214 60.3
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 7.4e-62 241.1 211 62.6
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 7.4e-62 241.1 197 65.5
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.3e-61 240.4 211 62.1
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 1.6e-61 240.0 202 64.9
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 2.1e-61 239.6 213 60.1
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 2.1e-61 239.6 205 63.9
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 2.1e-61 239.6 202 64.9
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 2.8e-61 239.2 218 61.5
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 3.6e-61 238.8 211 62.1
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 4.8e-61 238.4 206 66.0
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 4.8e-61 238.4 187 66.3
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 6.2e-61 238.0 211 62.1
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.4e-60 236.9 211 61.6
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.8e-60 236.5 211 62.1
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 2.4e-60 236.1 176 68.8
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 5.8e-59 231.5 204 62.3
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 1.7e-58 229.9 282 51.4
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 2.2e-58 229.6 156 75.0
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 2.4e-57 226.1 168 73.2
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.4e-57 226.1 156 73.7
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 4.2e-57 225.3 205 61.0
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 7.1e-57 224.6 180 65.6
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 7.1e-57 224.6 156 73.1
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 2.7e-56 222.6 150 78.0
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 6.0e-56 221.5 158 73.4
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 1.3e-55 220.3 191 61.3
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.8e-55 219.9 179 63.1
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 3.9e-55 218.8 155 72.9
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 3.9e-55 218.8 196 60.2
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 7.4e-54 214.5 157 70.7
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.3e-53 213.8 209 59.3
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 4.8e-53 211.8 211 59.2
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 4.8e-53 211.8 155 71.0
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 1.8e-52 209.9 152 74.3
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 2.6e-51 206.1 148 70.3
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 5.8e-51 204.9 146 70.5
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 7.1e-49 198.0 157 64.3
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 1.2e-48 197.2 163 63.2
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.2e-48 197.2 204 56.9
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 1.3e-47 193.7 176 58.0
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.8e-47 193.4 148 68.9
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 3.8e-42 175.6 119 78.2
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 2.5e-41 172.9 183 55.7
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.5e-41 172.9 161 59.6
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 8.7e-39 164.5 197 52.3
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 3.7e-37 159.1 170 52.9
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 4.6e-32 142.1 87 77.0
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 4.3e-30 135.6 86 79.1
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 7.4e-30 134.8 117 63.2
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 7.4e-30 134.8 187 43.9
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 3.7e-29 132.5 79 82.3
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 4.8e-29 132.1 112 63.4
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 6.3e-29 131.7 143 55.2
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 5.9e-27 125.2 182 44.5
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 2.3e-23 113.2 72 79.2
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 2.0e-22 110.2 172 44.2
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 2.9e-18 96.3 239 30.5
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 3.8e-18 95.9 97 53.6
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 4.7e-16 89.0 91 53.8
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.0e-14 83.6 84 56.0
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 4.4e-14 82.4 102 51.0
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 1.2e-11 74.3 83 51.8
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 2.7e-11 73.2 61 68.9
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.3e-10 70.9 72 48.6
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 1.9e-09 67.0 96 42.7
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.0e-07 61.2 94 45.7


User provided reference genes

Program Settings