Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 0.0e+00 1994.5 985 100.0
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 0.0e+00 1674.1 1017 84.0
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 0.0e+00 1535.0 1034 77.3
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 0.0e+00 1283.9 1033 67.3
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 5.4e-142 509.6 1078 36.6
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 4.4e-136 490.0 1100 34.1
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 4.4e-136 490.0 1099 33.9
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 8.3e-135 485.7 1072 34.8
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.1e-134 485.3 1054 34.9
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 1.7e-132 478.0 1097 34.5
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 2.6e-128 464.2 1077 33.7
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 7.5e-128 462.6 1082 33.6
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 9.8e-128 462.2 1018 33.9
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 2.9e-127 460.7 1196 32.2
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.1e-126 456.8 1057 33.6
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 5.9e-125 453.0 1051 34.6
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 5.9e-125 453.0 1056 33.5
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 2.1e-122 444.5 1090 32.2
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 3.4e-120 437.2 1036 32.7
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 7.5e-120 436.0 1111 31.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.7e-119 434.9 1105 33.1
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 2.9e-119 434.1 1072 32.8
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 1.7e-116 424.9 1012 33.2
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.1e-113 415.6 1107 31.9
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 6.8e-113 412.9 1066 32.6
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 2.4e-110 404.4 1072 31.2
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 9.2e-110 402.5 1058 30.7
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 1.3e-108 398.7 1021 31.9
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 2.8e-106 391.0 1058 31.7
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.8e-106 391.0 1023 31.8
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 3.6e-106 390.6 1025 31.2
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 3.1e-105 387.5 1011 30.9
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 2.6e-104 384.4 1172 29.1
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 5.8e-104 383.3 1007 31.6
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 6.0e-101 373.2 1022 31.1
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 1.7e-100 371.7 1107 29.7
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 2.3e-100 371.3 1172 29.5
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.9e-99 368.2 1131 30.3
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 3.3e-99 367.5 1012 30.5
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 3.6e-98 364.0 1046 30.6
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.1e-97 360.9 1032 30.6
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 3.1e-97 360.9 1096 30.7
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.2e-96 359.0 1015 30.4
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.5e-96 358.6 1035 29.5
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 5.8e-96 356.7 1071 30.0
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.3e-95 355.5 1056 30.2
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.9e-95 354.4 1157 29.9
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 4.9e-95 353.6 1051 30.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 4.9e-95 353.6 1091 30.3
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 8.4e-95 352.8 1128 29.2
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.9e-94 351.7 1046 30.0
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 9.3e-94 349.4 1099 28.7
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 9.3e-94 349.4 1047 29.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 1.2e-93 349.0 1029 28.9
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 2.7e-93 347.8 1083 29.6
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 3.5e-93 347.4 1029 29.5
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.3e-92 345.5 1064 29.4
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 8.7e-92 342.8 1242 27.6
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.9e-91 341.7 1070 28.2
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.5e-91 341.3 1051 29.7
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.3e-91 340.5 1082 29.1
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 5.6e-91 340.1 1076 29.1
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.3e-90 339.0 1045 28.9
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.6e-90 338.6 1080 28.8
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.6e-90 338.6 1080 28.8
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.1e-89 335.9 1004 28.8
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.8e-89 335.1 1094 28.2
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 1.5e-88 332.0 1037 28.0
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 3.8e-87 327.4 1051 29.3
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 4.2e-86 323.9 1014 28.6
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 7.1e-86 323.2 965 29.8
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 6.0e-85 320.1 1006 28.5
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 9.6e-83 312.8 979 29.7
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.4e-78 298.9 1365 25.6
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.0e-76 292.7 1092 28.0
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.0e-76 291.2 1012 27.9
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 6.7e-76 290.0 1309 25.9
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 4.8e-74 283.9 1006 27.6
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 6.2e-74 283.5 1047 27.5
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.2e-72 279.3 1050 27.0
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 5.8e-72 276.9 512 39.5
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 1.2e-69 269.2 1076 27.4
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 2.7e-69 268.1 1284 25.6
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.0e-68 264.6 950 28.0
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.9e-68 264.2 950 28.0
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 8.7e-68 263.1 1051 26.6
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 4.8e-66 257.3 1310 25.0
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 3.1e-65 254.6 1116 26.7
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.5e-64 252.3 467 37.7
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 2.0e-64 251.9 1312 25.0
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 1.0e-63 249.6 802 28.4
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.0e-63 247.3 677 31.3
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.9e-60 237.7 980 26.3
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.5e-59 235.7 981 25.4
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 3.3e-59 234.6 500 34.4
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.4e-57 229.2 142 73.2
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.3e-55 222.6 206 57.3
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.3e-55 222.6 220 55.0
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.9e-55 221.5 248 48.4
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 3.9e-52 211.1 239 41.4
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 2.5e-51 208.4 177 54.8
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 4.3e-51 207.6 988 24.2
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.2e-50 205.3 709 28.1
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.8e-50 204.1 191 49.2
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 1.5e-48 199.1 188 51.1
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 4.8e-42 177.6 104 75.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 5.3e-41 174.1 111 69.4
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 9.1e-41 173.3 125 64.0
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 3.2e-38 164.9 445 32.8
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.6e-37 162.5 183 42.1
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 3.3e-35 154.8 199 41.7
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 3.7e-34 151.4 129 55.0
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.4e-33 148.7 258 35.3
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 5.0e-31 141.0 134 52.2
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.7e-29 135.2 90 67.8
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.0e-24 119.0 82 61.0
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.9e-24 117.5 76 67.1
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 7.2e-22 110.5 110 46.4
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 5.2e-20 104.4 215 33.5
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 5.4e-17 94.4 99 51.5
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 1.4e-12 79.7 125 30.4
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 5.4e-09 67.8 139 30.9
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 1.3e-07 63.2 104 28.8
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.3e-06 58.5 87 42.5


User provided reference genes

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