Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 7.9e-198 693.7 390 100.0
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.7e-182 642.1 390 94.6
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.1e-180 636.7 388 88.9
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.0e-136 490.7 398 72.4
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.2e-115 419.9 410 59.5
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.0e-112 409.5 411 57.7
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.2e-108 397.5 409 59.4
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 4.6e-105 385.6 414 58.2
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.3e-103 379.0 434 55.1
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 3.7e-102 375.9 430 53.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.4e-101 374.0 412 57.3
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 5.8e-100 368.6 409 58.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.2e-97 360.9 401 57.6
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 4.6e-97 359.0 429 53.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.5e-95 354.0 413 56.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-93 347.8 432 52.1
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.2e-92 344.4 425 52.9
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 2.6e-92 343.2 433 52.2
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 5.9e-92 342.0 413 55.4
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.0e-91 341.3 432 52.1
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-91 340.1 433 51.7
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 6.5e-91 338.6 417 56.6
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 6.5e-91 338.6 412 52.2
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 1.9e-90 337.0 401 52.6
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.5e-90 336.7 401 57.9
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.5e-89 332.8 414 56.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.0e-88 331.3 425 52.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.0e-88 331.3 425 52.7
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.0e-88 329.7 420 53.3
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-85 321.2 409 54.8
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 5.3e-85 318.9 392 51.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 9.0e-85 318.2 435 49.7
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 9.0e-85 318.2 344 54.1
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.0e-84 317.0 420 53.1
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 5.9e-84 315.5 397 52.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.3e-83 314.3 425 51.8
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.7e-83 313.9 397 51.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 6.5e-83 312.0 418 49.8
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 5.5e-82 308.9 438 50.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.2e-81 307.8 413 52.3
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-80 304.3 402 49.0
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-80 303.1 402 50.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-79 301.2 405 53.6
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.5e-79 300.1 406 53.0
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 9.7e-79 298.1 414 55.6
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.3e-78 297.7 392 54.3
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.2e-78 297.0 407 52.6
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 9.4e-74 281.6 400 53.5
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 7.9e-73 278.5 373 52.3
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.3e-72 276.9 404 53.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.1e-72 275.8 406 54.2
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 5.1e-72 275.8 397 45.8
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.3e-70 271.2 375 44.3
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.4e-69 267.7 444 50.9
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 8.5e-67 258.5 466 47.6
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 3.2e-66 256.5 390 48.2
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.3e-63 246.5 380 45.8
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 7.5e-63 245.4 311 50.2
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 2.0e-60 237.3 255 54.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.5e-60 236.5 399 42.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.6e-57 227.6 404 48.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.7e-57 226.9 408 40.0
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 6.1e-57 225.7 384 45.1
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.8e-56 224.2 391 46.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-56 223.8 391 41.9
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-56 223.8 391 41.9
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.3e-56 223.8 387 41.6
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.0e-56 223.4 403 44.4
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.0e-56 223.4 403 44.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-56 223.4 382 41.1
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.0e-56 223.4 382 41.1
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.0e-56 223.0 402 46.8
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.2e-56 222.6 393 38.4
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 6.8e-56 222.2 434 39.9
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.8e-56 221.9 412 38.8
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 2.6e-55 220.3 399 40.1
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 3.7e-54 216.5 392 37.8
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 8.3e-54 215.3 277 50.5
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.0e-51 208.4 376 40.4
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.3e-51 208.0 389 40.1
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.5e-51 205.7 398 44.2
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 4.2e-50 203.0 396 43.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.2e-48 196.1 374 43.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.8e-48 195.7 374 41.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-47 194.9 374 42.0
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.5e-47 194.5 431 36.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.4e-47 193.0 490 40.6
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 7.5e-47 192.2 416 41.8
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.3e-46 191.4 387 45.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.8e-46 190.3 396 38.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.8e-45 187.6 463 41.3
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 3.1e-45 186.8 407 40.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 7.0e-45 185.7 387 45.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.6e-44 184.5 396 40.9
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-44 184.5 388 44.1
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-44 184.5 388 44.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 2.0e-44 184.1 406 42.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.6e-41 174.5 486 39.3
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.7e-41 172.9 397 39.8
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.4e-40 171.4 374 36.9
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.0e-39 167.5 389 35.5
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 3.2e-37 160.2 387 37.7
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.9e-35 153.3 394 35.5
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.9e-34 151.0 417 34.8
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.9e-34 151.0 389 36.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.9e-34 151.0 389 36.8
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.5e-34 150.6 397 38.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 3.3e-34 150.2 467 38.5
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 2.1e-33 147.5 435 35.9
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-32 144.8 437 38.4
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 3.1e-32 143.7 379 32.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 3.1e-32 143.7 379 32.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.1e-32 143.7 389 34.2
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-31 141.7 415 35.9
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.4e-31 139.8 217 46.1
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 4.4e-31 139.8 374 41.2
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.7e-30 137.9 399 37.6
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-29 134.8 109 64.2
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.2e-29 133.7 284 38.0
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.2e-28 131.7 282 35.8
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.0e-28 131.0 379 33.2
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.5e-28 130.2 381 33.1
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 3.5e-28 130.2 426 38.0
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 7.8e-28 129.0 302 36.4
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 3.0e-27 127.1 441 34.9
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 8.6e-27 125.6 436 34.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 7.3e-26 122.5 440 32.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 7.3e-26 122.5 305 30.8
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 9.5e-26 122.1 419 38.2
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.6e-25 121.3 223 42.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.1e-25 120.9 436 35.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 4.7e-25 119.8 440 32.3
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-24 118.6 411 33.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.8e-24 117.9 449 32.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 8.9e-24 115.5 440 31.6
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 8.9e-24 115.5 430 35.1
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 8.9e-24 115.5 444 34.5
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 1.5e-23 114.8 388 37.4
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 7.5e-23 112.5 228 49.1
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-22 110.2 390 36.9
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 4.6e-20 103.2 218 40.8
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 8.6e-19 99.0 186 34.4
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-18 97.8 448 35.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 5.6e-18 96.3 311 31.2
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 8.1e-17 92.4 397 35.3
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-16 91.7 193 40.9
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.0e-16 90.1 92 71.7
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.4e-15 86.7 414 28.7
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 4.6e-12 76.6 199 32.7
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 2.3e-11 74.3 53 75.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 7.3e-10 69.3 139 36.7
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 6.9e-08 62.8 145 40.0
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 7.6e-07 59.3 137 32.1
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.2e-06 57.8 165 32.1
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 2.2e-06 57.8 141 28.4


User provided reference genes

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