Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 3.4e-65 251.5 127 100.0
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 2.9e-64 248.4 127 99.2
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.9e-61 238.0 140 89.3
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.9e-61 238.0 140 89.3
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 6.2e-59 230.7 127 90.6
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 9.9e-57 223.4 127 86.6
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 2.7e-54 215.3 123 86.2
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 1.0e-53 213.4 124 83.9
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 3.0e-53 211.8 127 85.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.6e-53 210.7 129 82.9
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.5e-52 209.5 127 83.5
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.9e-52 209.1 115 88.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 2.5e-52 208.8 125 83.2
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 3.3e-52 208.4 127 82.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.3e-52 208.0 122 81.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.3e-52 208.0 122 81.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.3e-52 208.0 122 81.1
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 7.3e-52 207.2 117 88.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 9.6e-52 206.8 126 81.0
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.6e-52 206.8 124 83.9
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.2e-51 206.5 129 81.4
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.6e-51 206.1 130 80.0
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 2.8e-51 205.3 147 71.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 2.8e-51 205.3 147 71.4
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.8e-51 205.3 127 80.3
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 3.6e-51 204.9 124 83.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 6.2e-51 204.1 125 80.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.1e-50 203.4 131 78.6
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 6.9e-50 200.7 122 82.8
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.2e-49 199.9 115 84.3
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.0e-49 199.1 128 77.3
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.6e-49 198.7 128 75.8
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 3.4e-49 198.4 128 78.1
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.4e-49 198.0 124 80.6
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 9.9e-49 196.8 119 82.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.2e-48 195.7 119 79.8
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 3.8e-48 194.9 126 76.2
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 6.4e-48 194.1 125 77.6
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.2e-47 191.8 116 81.0
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 3.2e-47 191.8 130 76.2
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.2e-47 191.8 125 74.4
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.2e-47 191.8 127 73.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.4e-47 191.0 124 78.2
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 5.4e-47 191.0 123 77.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 7.1e-47 190.7 121 78.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 9.3e-47 190.3 124 75.8
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 9.3e-47 190.3 128 72.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.2e-46 189.9 121 81.8
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 2.7e-46 188.7 114 79.8
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 3.5e-46 188.3 115 80.9
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 4.6e-46 188.0 121 77.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.3e-45 185.7 126 73.8
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 5.1e-45 184.5 116 78.4
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 5.1e-45 184.5 126 75.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 5.1e-45 184.5 122 73.0
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.1e-44 183.3 116 77.6
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.5e-44 183.0 126 75.4
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.5e-44 182.2 128 74.2
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.3e-44 181.4 126 72.2
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 5.6e-44 181.0 116 76.7
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 9.6e-44 180.3 129 71.3
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 9.6e-44 180.3 130 73.1
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.3e-43 179.9 116 77.6
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 2.1e-43 179.1 121 74.4
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.6e-43 178.3 127 72.4
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.1e-42 176.8 113 77.0
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.1e-42 176.8 114 78.1
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.8e-42 176.0 117 73.5
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 2.4e-42 175.6 140 67.1
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-42 175.3 113 77.9
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 6.9e-42 174.1 132 68.9
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 9.0e-42 173.7 116 74.1
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-41 172.6 113 77.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-41 172.6 121 74.4
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 7.6e-41 170.6 120 74.2
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-40 169.9 158 59.5
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.9e-40 168.7 115 75.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 4.9e-40 167.9 127 70.1
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 6.4e-40 167.5 119 70.6
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.4e-39 166.4 122 68.9
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.4e-39 165.6 115 74.8
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 4.2e-39 164.9 117 68.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.4e-39 164.5 130 66.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.3e-39 163.7 119 69.7
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.6e-38 162.9 131 69.5
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.1e-38 162.5 120 66.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.1e-38 162.5 119 68.9
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.6e-38 161.4 119 68.1
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.8e-37 159.5 113 74.3
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.7e-37 157.5 126 61.9
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-36 156.0 179 50.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 3.3e-36 155.2 139 61.2
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 5.6e-36 154.5 107 71.0
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 9.6e-36 153.7 116 63.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 9.6e-36 153.7 115 63.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.3e-34 147.9 118 68.6
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 6.9e-34 147.5 118 64.4
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 9.0e-34 147.1 125 62.4
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.5e-33 146.4 114 62.3
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.5e-33 144.8 129 58.9
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 9.9e-33 143.7 118 60.2
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.2e-32 142.5 90 74.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.4e-32 141.0 85 81.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 6.4e-32 141.0 170 51.8
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.1e-31 140.2 124 62.1
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 3.2e-31 138.7 128 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.2e-30 136.7 128 56.2
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 2.1e-30 136.0 132 58.3
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.7e-30 135.6 70 92.9
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 4.6e-30 134.8 112 64.3
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 7.9e-30 134.0 129 56.6
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.3e-29 133.3 88 71.6
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.8e-29 132.9 112 63.4
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 3.0e-29 132.1 100 70.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 8.7e-29 130.6 106 61.3
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 8.7e-29 130.6 129 55.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.6e-27 126.3 179 44.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.7e-27 125.2 69 87.0
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 3.1e-26 122.1 119 55.5
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.6e-25 119.0 84 70.2
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 7.6e-25 117.5 70 77.1
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 7.6e-25 117.5 106 56.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.2e-23 111.7 112 58.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-18 96.3 83 61.4
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.4e-15 86.7 51 80.4
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.3e-13 79.3 48 75.0
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.8e-13 77.4 49 73.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-12 77.0 83 55.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 7.4e-12 74.3 65 52.3
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-08 63.9 57 63.2
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 8.5e-08 60.8 66 53.0
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 7.9e-06 54.3 60 51.7


User provided reference genes

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