Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.5e-76 288.5 331 100.0
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.4e-62 242.3 331 92.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.3e-57 226.9 329 91.8
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.6e-56 223.4 331 91.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 2.6e-56 223.4 328 87.5
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.5e-56 221.9 328 91.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 9.8e-56 221.5 332 89.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 332 89.2
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.7e-55 220.7 328 89.9
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.8e-55 219.9 328 90.9
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.8e-55 219.9 311 93.9
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 4.9e-55 219.2 307 92.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 322 91.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 332 89.8
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-54 217.2 331 89.7
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.8e-54 217.2 332 89.8
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.4e-54 216.9 323 89.8
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.4e-54 216.9 331 89.4
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 2.4e-54 216.9 331 89.4
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.1e-54 216.5 332 89.2
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.1e-54 216.5 332 89.2
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 91.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 5.4e-54 215.7 309 93.9
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.4e-54 215.7 324 89.8
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 5.4e-54 215.7 327 90.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 7.0e-54 215.3 332 88.9
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 7.0e-54 215.3 326 90.5
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 9.2e-54 214.9 323 90.1
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 87.9
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 91.3
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.6e-53 214.2 332 88.9
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.0e-53 213.8 328 88.7
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.0e-53 213.8 324 89.8
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.7e-53 213.4 329 87.8
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.7e-53 213.4 317 90.5
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.5e-53 213.0 327 89.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.5e-53 213.0 327 89.3
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.5e-53 213.0 324 89.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.5e-53 213.0 324 89.2
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 3.5e-53 213.0 317 90.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 3.5e-53 213.0 333 89.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 4.5e-53 212.6 320 91.6
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 5.9e-53 212.2 333 89.2
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 1.0e-52 211.5 313 89.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.0e-52 211.5 104 98.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 329 88.8
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 331 87.9
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.3e-52 211.1 331 87.9
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.3e-52 210.3 321 86.3
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.9e-52 209.9 329 88.4
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 326 88.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.9e-52 209.9 330 89.4
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 328 88.4
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.9e-52 209.9 329 80.2
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-52 209.5 324 76.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.0e-52 209.1 104 96.2
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 5.0e-52 209.1 320 89.7
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 6.6e-52 208.8 328 87.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 6.6e-52 208.8 320 90.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 8.6e-52 208.4 320 89.7
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 8.6e-52 208.4 315 91.1
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 8.6e-52 208.4 320 87.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.1e-51 208.0 320 89.4
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.1e-51 208.0 324 86.1
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-51 207.6 331 88.5
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.9e-51 207.2 331 88.5
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 311 92.0
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.5e-51 206.8 331 88.8
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 331 88.8
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.5e-51 206.8 324 87.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 4.3e-51 206.1 318 89.0
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.6e-51 205.7 322 89.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.6e-51 205.7 331 87.9
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.6e-51 205.7 324 89.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.3e-51 205.3 331 87.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 7.3e-51 205.3 326 86.8
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.5e-51 204.9 331 85.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.2e-50 204.5 304 92.8
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.6e-50 204.1 331 87.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.6e-50 204.1 370 67.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.6e-50 204.1 320 89.1
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.1e-50 203.8 331 85.5
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.1e-50 203.8 322 89.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.8e-50 203.4 331 87.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.8e-50 203.4 328 88.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 2.8e-50 203.4 311 90.4
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 3.6e-50 203.0 331 87.6
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 4.7e-50 202.6 331 87.3
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.1e-50 202.2 320 90.0
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 8.0e-50 201.8 331 87.6
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.0e-49 201.4 331 87.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.0e-49 201.4 314 90.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.8e-49 200.7 327 87.5
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.0e-49 199.9 335 87.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 5.2e-49 199.1 322 88.8
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-48 198.0 328 87.8
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.2e-48 198.0 331 85.8
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.5e-48 197.6 329 86.9
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.6e-48 196.8 340 74.7
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 3.4e-48 196.4 347 72.6
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.4e-48 196.4 338 77.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 3.4e-48 196.4 297 92.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 4.4e-48 196.1 331 86.7
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.7e-48 195.7 305 92.1
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.3e-47 194.5 314 89.8
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-47 194.1 328 86.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.9e-47 193.4 245 85.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 2.9e-47 193.4 247 87.4
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 4.9e-47 192.6 249 87.6
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 6.4e-47 192.2 342 59.6
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 6.4e-47 192.2 296 91.2
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.4e-46 191.0 306 88.6
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.8e-46 190.7 318 87.1
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 348 83.3
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 313 85.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.2e-46 189.9 331 85.8
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-46 189.9 324 84.6
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.2e-46 189.9 324 84.6
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 7.0e-46 188.7 332 86.4
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.0e-46 188.7 349 64.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.0e-45 187.2 331 85.5
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.7e-45 186.8 348 75.6
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.0e-44 184.9 347 70.3
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.0e-44 183.3 315 87.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.9e-43 180.6 318 86.8
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.5e-43 180.3 326 72.4
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.2e-42 177.9 313 85.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.2e-42 177.9 249 67.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 4.7e-42 176.0 330 76.1
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.7e-42 176.0 331 77.6
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.7e-42 176.0 331 77.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.2e-42 175.6 349 73.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 8.0e-42 175.3 315 85.1
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.8e-41 174.1 313 83.4
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 3.1e-41 173.3 329 84.8
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.9e-41 171.8 322 82.0
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.9e-41 171.8 333 68.5
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.5e-40 171.0 313 85.0
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.5e-40 171.0 102 81.4
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 2.6e-40 170.2 90 88.9
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 2.6e-40 170.2 90 88.9
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 3.4e-40 169.9 334 80.8
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 4.4e-40 169.5 104 78.8
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 7.5e-40 168.7 313 83.1
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.5e-40 168.7 104 80.8
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 8.3e-39 165.2 319 84.6
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.9e-38 164.1 93 83.9
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.9e-38 164.1 93 83.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.6e-37 161.0 95 81.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.7e-37 160.2 288 74.7
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 4.6e-37 159.5 103 75.7
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.7e-36 157.5 98 78.6
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 5.0e-36 156.0 334 79.9
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 1.9e-35 154.1 108 74.1
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.3e-35 153.3 248 78.6
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.2e-29 134.8 89 66.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.1e-29 134.0 71 85.9
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 3.0e-28 130.2 322 75.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 6.2e-26 122.5 304 77.6
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.4e-25 121.3 76 78.9
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.6e-24 115.5 276 79.3
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.9e-19 100.9 72 69.4
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.3e-19 99.8 64 75.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.4e-17 94.0 50 80.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.0e-16 90.9 118 88.1
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 5.8e-16 89.4 62 61.3
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.1e-14 85.1 62 59.7
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 5.4e-14 82.8 252 68.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.3e-14 82.0 258 85.3
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.2e-13 81.6 118 50.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.6e-13 79.7 63 58.7
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 7.8e-13 79.0 47 83.0
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 2.3e-12 77.4 43 79.1
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 1.1e-09 68.6 41 78.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.4e-09 68.2 41 78.0
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 9.0e-09 65.5 41 75.6
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.8e-08 62.8 33 90.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 7.6e-08 62.4 47 66.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 4.9e-07 59.7 33 84.8
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 6.4e-07 59.3 39 71.8


User provided reference genes

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