Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.2e-109 399.8 203 100.0
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 1.3e-106 389.8 203 97.0
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 3.0e-100 368.6 203 92.6
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.2e-96 356.7 203 89.2
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 4.9e-90 334.7 203 82.3
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.0e-89 330.9 203 81.8
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.7e-87 326.2 203 79.8
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 6.6e-87 324.3 203 79.3
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.1e-86 323.6 200 81.0
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.1e-86 323.6 203 81.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.9e-86 322.8 203 79.8
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.5e-86 322.4 202 79.7
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.5e-86 322.4 203 79.8
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.6e-86 321.2 198 77.8
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.6e-86 321.2 199 80.4
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 9.5e-86 320.5 198 77.8
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 2.8e-85 318.9 200 79.5
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.7e-85 318.2 198 77.3
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.0e-84 317.0 202 78.7
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.8e-84 316.2 200 79.0
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.8e-84 316.2 200 79.5
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 3.1e-84 315.5 203 77.8
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.2e-83 313.5 198 78.3
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 2.6e-83 312.4 200 78.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.6e-83 312.4 200 78.5
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 7.5e-83 310.8 200 78.0
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-82 310.1 202 78.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.7e-82 309.7 199 77.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.2e-82 309.3 200 77.0
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 2.9e-82 308.9 203 76.8
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.9e-82 308.9 199 78.9
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 3.7e-82 308.5 198 76.8
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.4e-82 307.8 202 78.2
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.1e-81 307.0 200 76.5
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.9e-81 306.2 202 74.3
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.2e-81 305.4 198 77.8
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 5.4e-81 304.7 202 73.8
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.0e-81 304.3 200 76.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.0e-81 304.3 198 77.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 9.2e-81 303.9 200 77.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.2e-80 303.5 202 73.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.6e-80 303.1 200 76.5
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 2.0e-80 302.8 203 75.9
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.7e-80 302.4 203 74.9
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 74.4
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 4.6e-80 301.6 202 75.7
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 4.6e-80 301.6 202 75.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 4.6e-80 301.6 198 76.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 76.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 7.8e-80 300.8 200 75.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 7.8e-80 300.8 198 76.3
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.3e-79 300.1 202 73.3
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 2.3e-79 299.3 202 75.2
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.3e-79 299.3 201 75.6
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 3.0e-79 298.9 198 74.7
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 3.0e-79 298.9 203 74.4
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 3.0e-79 298.9 203 74.4
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 3.0e-79 298.9 203 74.4
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 3.0e-79 298.9 198 75.8
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 3.9e-79 298.5 202 74.8
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 5.0e-79 298.1 203 74.4
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 6.6e-79 297.7 203 74.9
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.1e-78 297.0 203 73.9
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.5e-78 296.6 203 73.4
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.5e-78 296.6 203 73.4
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-78 296.6 201 75.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-78 296.2 197 76.6
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.9e-78 296.2 200 76.0
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 72.5
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 4.3e-78 295.0 203 73.4
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.3e-78 295.0 195 74.9
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.3e-78 295.0 203 73.9
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 5.6e-78 294.7 198 75.8
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.8e-77 292.4 199 76.9
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 4.7e-77 291.6 200 74.0
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.1e-77 290.8 198 72.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 8.1e-77 290.8 204 74.5
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.1e-76 290.4 213 70.0
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.1e-76 290.4 206 71.8
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.4e-76 290.0 200 76.5
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.8e-76 289.7 198 72.7
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.3e-76 289.3 188 76.6
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 2.3e-76 289.3 200 73.0
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 3.1e-76 288.9 202 71.8
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 6.8e-76 287.7 199 71.4
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 4.4e-75 285.0 194 74.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 7.5e-75 284.3 195 72.8
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.3e-74 283.5 198 73.7
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.3e-74 283.5 181 76.8
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 3.7e-74 282.0 195 71.8
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 6.4e-74 281.2 199 72.9
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 8.3e-74 280.8 200 70.5
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 1.4e-73 280.0 200 71.0
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.4e-73 278.1 182 75.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 3.5e-72 275.4 195 69.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 7.8e-72 274.2 178 74.2
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.8e-72 274.2 200 70.0
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 3.9e-71 271.9 198 68.7
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.5e-70 270.0 205 69.8
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.5e-70 270.0 200 70.5
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.9e-70 269.6 200 68.5
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 2.5e-70 269.2 200 70.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.5e-70 269.2 203 66.5
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 4.3e-70 268.5 184 73.4
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.8e-69 265.8 202 65.8
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.2e-69 264.6 205 68.3
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.4e-68 263.5 198 68.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.4e-68 263.5 181 71.8
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 6.8e-68 261.2 179 72.6
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 8.9e-68 260.8 177 73.4
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 2.6e-67 259.2 199 66.3
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-66 256.5 194 68.6
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 2.2e-66 256.1 333 48.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.2e-66 256.1 185 66.5
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 3.2e-65 252.3 193 62.2
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 2.3e-63 246.1 167 76.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 4.3e-62 241.9 239 57.3
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.6e-61 238.8 220 58.6
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 6.2e-61 238.0 219 60.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-59 233.8 252 54.0
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.4e-58 228.0 235 56.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 5.4e-57 224.9 167 70.1
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.2e-50 203.0 190 52.6
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.4e-50 201.4 227 52.0
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.4e-49 200.3 188 53.7
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 4.3e-46 188.7 128 74.2
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 2.0e-43 179.9 112 79.5
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 6.4e-42 174.9 120 70.0
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 6.4e-42 174.9 191 50.8
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 5.5e-41 171.8 192 49.0
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 9.3e-41 171.0 112 74.1
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.8e-39 166.8 112 73.2
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.5e-38 162.9 177 48.0
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.1e-37 159.8 116 72.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.9e-34 149.4 149 51.0
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.1e-33 147.5 94 73.4
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-31 141.0 103 68.9
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.8e-31 140.2 207 40.6
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.9e-30 136.7 85 77.6
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.8e-29 132.1 81 77.8
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-28 131.0 81 77.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-28 129.8 84 75.0
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-27 127.5 90 71.1
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-26 124.0 129 52.7
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.1e-25 120.9 209 36.8
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.0e-23 112.8 77 72.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.7e-23 111.3 68 79.4
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 2.5e-22 109.8 130 47.7
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.5e-22 109.8 102 57.8
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.6e-21 107.1 105 59.0
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.8e-20 103.6 72 68.1
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 2.4e-20 103.2 102 54.9
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.6e-19 99.8 70 68.6
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 5.0e-18 95.5 75 65.3
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 5.5e-17 92.0 195 31.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.1e-14 84.3 105 46.7
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.3e-13 80.9 199 30.7
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 4.8e-13 79.0 49 71.4
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.2e-13 78.2 115 42.6
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.8e-12 77.0 45 77.8
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 7.2e-09 65.1 47 61.7
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 6.1e-08 62.0 42 66.7
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 6.1e-08 62.0 70 45.7
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.5e-06 57.4 40 67.5
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 5.7e-06 55.5 36 69.4
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 7.4e-06 55.1 42 69.0


User provided reference genes

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