Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 0.0e+00 1815.8 921 100.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 0.0e+00 1667.5 909 94.3
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 0.0e+00 1528.8 913 87.5
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 0.0e+00 1375.9 849 84.1
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 0.0e+00 1100.5 865 67.3
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 0.0e+00 1099.0 871 68.8
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.6e-302 1042.7 974 60.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 3.4e-300 1035.0 871 65.1
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.0e-296 1023.5 873 65.1
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.1e-295 1020.0 876 63.7
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 7.4e-295 1017.3 863 64.8
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 6.9e-293 1010.7 863 63.4
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 9.3e-290 1000.3 851 63.7
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.1e-289 999.2 867 63.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.0e-288 996.9 873 64.0
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.0e-288 996.9 873 64.3
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 1.8e-288 996.1 868 64.1
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.3e-288 995.7 873 64.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.3e-288 995.7 857 63.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.3e-288 995.7 853 62.5
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.1e-288 994.6 882 63.7
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.7e-288 994.2 873 64.0
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 3.7e-286 988.4 864 63.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.1e-285 986.9 864 62.4
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 5.9e-284 981.1 868 62.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.3e-283 979.9 866 61.8
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 8.5e-283 977.2 864 62.3
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 4.2e-282 974.9 871 62.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.0e-280 970.3 885 62.5
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 1.4e-280 969.9 874 61.3
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.2e-278 962.6 861 63.8
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 2.4e-277 959.1 766 67.6
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.7e-275 953.0 882 59.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 5.0e-275 951.4 876 60.3
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.4e-274 949.9 875 60.8
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 4.2e-274 948.3 872 60.1
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.6e-273 946.4 859 60.1
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.3e-269 931.4 866 60.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 9.1e-269 930.6 875 60.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.2e-268 930.2 879 59.5
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.2e-267 926.0 864 60.5
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 5.0e-267 924.9 886 59.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 8.5e-267 924.1 917 59.2
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 3.2e-266 922.2 846 60.0
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-265 920.2 877 59.3
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.0e-264 917.1 867 58.8
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 3.0e-264 915.6 908 58.0
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 6.7e-264 914.4 884 59.7
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 3.3e-263 912.1 886 58.0
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.4e-261 906.7 863 58.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 7.0e-261 904.4 895 56.5
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.0e-260 902.9 867 58.8
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 3.8e-259 898.7 891 57.8
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.2e-258 895.6 839 59.5
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 4.7e-257 891.7 880 56.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.0e-256 890.6 867 57.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 5.2e-256 888.3 861 57.1
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 1.5e-255 886.7 858 57.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 3.7e-254 882.1 860 57.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 9.1e-253 877.5 879 57.3
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 9.1e-253 877.5 968 53.9
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 4.5e-252 875.2 859 56.6
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 1.3e-251 873.6 865 56.8
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 8.5e-251 870.9 755 63.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.1e-250 870.5 870 56.1
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.6e-249 865.5 842 57.1
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.4e-248 863.6 867 56.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 5.2e-248 861.7 740 65.9
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.6e-247 859.4 862 55.8
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.3e-246 854.4 718 64.9
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.4e-245 852.8 856 55.8
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 4.1e-245 852.0 871 55.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.6e-244 850.1 859 56.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.7e-244 849.4 881 54.7
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.6e-241 840.1 838 56.7
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 6.1e-241 838.2 913 51.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 9.8e-239 830.9 789 58.7
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-238 830.5 851 55.3
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.3e-238 830.5 873 55.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-238 830.1 862 55.6
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.2e-237 825.9 865 55.1
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.2e-236 823.9 869 54.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 2.0e-236 823.2 869 54.9
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.8e-236 821.2 858 54.7
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.0e-235 820.8 863 54.6
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.0e-235 820.8 898 51.7
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 5.0e-235 818.5 858 54.5
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 3.3e-234 815.8 860 54.9
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 9.5e-234 814.3 769 58.9
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.4e-232 810.4 874 54.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.8e-232 810.1 831 55.6
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 4.0e-232 808.9 854 54.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 4.0e-232 808.9 956 51.7
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.2e-232 808.5 854 53.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 8.9e-232 807.7 866 54.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.5e-231 807.0 854 53.7
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.0e-231 806.6 854 53.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 9.2e-229 797.7 858 54.1
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.0e-228 796.6 842 54.3
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 6.2e-225 785.0 862 53.5
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.5e-223 780.4 859 53.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 4.1e-221 772.3 1038 47.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.8e-220 768.1 729 57.8
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-219 766.9 865 53.1
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 8.6e-219 764.6 855 53.0
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.5e-218 763.1 876 50.6
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-217 760.0 794 55.3
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 2.2e-214 750.0 872 51.0
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 7.1e-213 745.0 783 53.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.9e-210 736.9 881 48.0
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.9e-210 736.9 817 52.3
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 3.3e-210 736.1 717 56.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.1e-209 733.4 733 56.9
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.2e-204 717.6 549 68.7
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.9e-202 710.3 859 50.3
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 9.6e-202 708.0 593 62.9
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.4e-200 704.1 856 49.3
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 6.0e-188 662.1 855 47.7
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.0e-187 661.4 865 47.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.6e-183 645.2 551 63.7
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 2.2e-174 617.1 1105 38.4
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.0e-174 615.9 873 44.6
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.5e-173 613.6 911 43.4
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.0e-167 594.0 452 69.0
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 3.6e-164 583.2 809 45.7
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 7.7e-159 565.5 881 43.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.2e-153 547.4 725 43.6
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.2e-153 547.4 817 42.6
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 5.7e-146 522.7 736 44.0
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-145 521.5 578 52.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.7e-143 513.8 577 52.2
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 5.2e-123 446.4 860 36.4
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.5e-122 444.9 585 47.9
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 7.5e-106 389.4 552 42.8
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 2.2e-105 387.9 798 35.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.5e-101 375.2 366 59.6
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 3.9e-94 350.5 622 36.5
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 5.8e-90 336.7 457 46.6
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.3e-85 320.9 710 32.8
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.2e-79 302.4 245 65.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.4e-75 288.9 317 53.9
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.0e-65 256.1 284 54.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.3e-59 233.8 195 67.2
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.4e-53 213.4 251 51.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 9.7e-45 186.4 172 58.7
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 5.7e-37 160.6 138 63.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.9e-33 148.3 388 34.3
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 8.8e-30 136.7 386 34.5
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 8.8e-30 136.7 386 34.5
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.6e-23 114.8 363 27.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 6.1e-23 114.0 184 41.8
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 6.1e-23 114.0 184 41.8
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.7e-20 105.9 179 41.9
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 5.0e-17 94.4 60 81.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 9.5e-16 90.1 106 49.1
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 4.7e-15 87.8 96 51.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 8.0e-15 87.0 130 44.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 2.3e-14 85.5 195 36.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 3.0e-14 85.1 164 42.7
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 3.4e-13 81.6 97 48.5
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 7.5e-13 80.5 185 33.0
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-12 79.3 174 35.6
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-10 71.2 225 24.9
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-09 69.7 64 54.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 5.0e-09 67.8 64 50.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.6e-09 67.4 37 89.2
Rhsim03G0069200 Rhododendron simsii HOM05D000046 ORTHO05D001818 5.6e-08 64.3 76 46.1
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.2e-07 63.2 70 52.9
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.0e-07 60.5 224 30.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 4.0e-06 58.2 80 46.2
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 4.0e-06 58.2 100 45.0
Aqoxy4G02344 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 8.9e-06 57.0 71 46.5


User provided reference genes

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