Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 2.9e-117 425.2 215 100.0
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 2.2e-104 382.5 213 90.6
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 1.8e-90 336.3 176 95.5
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.0e-85 320.5 216 76.4
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 6.3e-64 248.1 206 62.1
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 1.7e-61 240.0 213 59.2
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 1.8e-58 229.9 206 61.7
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 3.0e-58 229.2 215 60.0
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 4.0e-58 228.8 218 58.7
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 8.9e-58 227.6 213 58.2
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 7.5e-57 224.6 200 59.0
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 9.8e-57 224.2 207 58.9
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.3e-56 223.8 207 58.5
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.9e-56 222.6 209 57.9
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.1e-55 220.7 211 56.4
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 3.2e-55 219.2 212 55.7
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 3.2e-55 219.2 175 64.6
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 9.2e-55 217.6 214 57.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.2e-54 217.2 174 63.2
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 4.6e-54 215.3 213 58.2
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.0e-53 214.2 211 55.9
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.7e-53 213.4 197 58.4
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 2.3e-53 213.0 188 59.0
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 3.9e-53 212.2 210 55.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 5.0e-53 211.8 215 54.9
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 3.3e-52 209.1 204 55.4
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 3.3e-52 209.1 205 59.0
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 9.5e-52 207.6 211 54.5
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.2e-51 207.2 210 51.4
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 1.6e-51 206.8 207 53.6
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 3.6e-51 205.7 215 52.1
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.6e-51 205.7 210 51.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 1.4e-50 203.8 211 53.6
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 3.1e-50 202.6 211 53.6
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 6.8e-50 201.4 205 55.1
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 8.9e-50 201.1 215 51.6
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 8.9e-50 201.1 213 52.1
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 8.9e-50 201.1 214 54.7
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 8.9e-50 201.1 207 54.6
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.2e-49 200.7 208 53.8
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 3.4e-49 199.1 209 53.6
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 3.4e-49 199.1 179 58.1
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 3.4e-49 199.1 208 54.3
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 7.5e-49 198.0 213 51.6
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 9.8e-49 197.6 228 47.8
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.7e-48 196.8 220 53.2
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 2.9e-48 196.1 209 50.7
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 3.7e-48 195.7 209 49.8
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 3.7e-48 195.7 208 54.3
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 6.4e-48 194.9 207 52.7
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.4e-48 194.9 207 52.7
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 6.4e-48 194.9 206 56.3
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 2.4e-47 193.0 215 49.8
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 5.4e-47 191.8 198 52.5
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 7.0e-47 191.4 199 52.3
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 9.2e-47 191.0 203 50.7
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.2e-46 190.7 189 55.6
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.6e-46 190.3 217 48.4
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 4.6e-46 188.7 207 48.8
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 4.6e-46 188.7 183 55.2
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 4.6e-46 188.7 179 57.0
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.0e-46 188.3 183 55.7
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 1.3e-45 187.2 180 57.2
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 3.0e-45 186.0 213 48.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 1.5e-44 183.7 197 54.8
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 2.5e-44 183.0 215 50.7
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 2.5e-44 183.0 186 53.8
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 3.3e-44 182.6 215 49.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 9.5e-44 181.0 208 52.4
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 1.1e-42 177.6 216 48.6
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.2e-41 174.1 212 50.5
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.5e-41 173.7 231 45.9
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.3e-40 170.6 171 55.0
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 1.7e-40 170.2 216 48.1
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 2.2e-40 169.9 172 55.8
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 2.4e-39 166.4 214 47.2
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 3.2e-39 166.0 172 53.5
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 4.1e-39 165.6 173 51.4
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 9.2e-39 164.5 190 49.5
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 1.0e-37 161.0 142 62.0
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 1.0e-37 161.0 187 49.2
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 1.7e-37 160.2 208 49.5
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 8.6e-37 157.9 143 61.5
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 1.5e-36 157.1 172 52.3
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 3.3e-36 156.0 179 48.0
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 1.6e-35 153.7 181 50.8
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 1.1e-34 151.0 217 43.8
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 1.8e-34 150.2 171 51.5
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 2.3e-34 149.8 171 48.5
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 2.3e-34 149.8 303 36.6
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 2.6e-33 146.4 174 45.4
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 4.1e-31 139.0 172 48.3
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 5.4e-31 138.7 166 48.2
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.3e-29 134.0 162 46.9
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 8.6e-29 131.3 173 46.2
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 4.3e-28 129.0 201 41.8
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 2.1e-27 126.7 141 51.1
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 8.1e-27 124.8 167 44.9
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 1.1e-26 124.4 166 38.6
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 4.4e-25 119.0 149 50.3
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 8.4e-24 114.8 167 41.9
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.9e-23 113.6 145 46.2
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 4.3e-20 102.4 102 53.9
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.6e-14 84.0 103 42.7
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 2.7e-14 83.2 76 53.9
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 2.7e-14 83.2 76 53.9
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 1.8e-13 80.5 76 57.9
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 1.5e-09 67.4 149 32.9
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 5.8e-09 65.5 123 33.3
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 9.3e-07 58.2 80 41.2
Sabra08G0145200 Salix brachista HOM05D007009 ORTHO05D008451 9.3e-07 58.2 67 55.2


User provided reference genes

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