Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 9.6e-164 580.1 293 100.0
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 7.7e-129 464.2 272 87.5
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 3.5e-121 438.7 275 83.3
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 1.1e-119 433.7 244 91.4
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 1.2e-100 370.5 280 71.1
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 1.5e-100 370.2 274 72.3
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 4.4e-100 368.6 271 72.3
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 5.7e-100 368.2 273 72.9
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 2.2e-99 366.3 272 71.0
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 3.7e-99 365.5 274 70.8
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 6.3e-99 364.8 272 74.6
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 3.1e-98 362.5 274 70.4
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 3.5e-97 359.0 271 71.2
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 5.9e-97 358.2 271 70.5
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 7.7e-97 357.8 274 69.0
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 1.7e-96 356.7 274 69.3
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 1.1e-95 354.0 272 67.3
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 1.5e-95 353.6 271 69.7
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.9e-95 353.2 277 70.0
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 1.9e-95 353.2 261 72.4
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 1.9e-95 353.2 237 73.8
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 2.5e-95 352.8 275 68.4
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 4.2e-95 352.1 271 69.0
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 4.2e-95 352.1 272 68.4
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 7.2e-95 351.3 244 72.5
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 7.2e-95 351.3 280 66.1
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 7.2e-95 351.3 247 74.1
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 9.5e-95 350.9 285 64.9
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 1.6e-94 350.1 279 69.2
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 1.6e-94 350.1 246 74.0
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 1.6e-94 350.1 271 68.3
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 2.1e-94 349.7 278 68.3
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 2.8e-94 349.4 271 67.5
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 3.6e-94 349.0 272 69.1
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 4.7e-94 348.6 272 68.4
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 4.7e-94 348.6 271 69.4
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 8.0e-94 347.8 226 77.0
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.0e-93 347.4 259 70.7
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 1.0e-93 347.4 271 69.0
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 1.4e-93 347.1 276 67.4
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 2.3e-93 346.3 254 71.7
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 2.3e-93 346.3 228 78.1
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 4.0e-93 345.5 273 68.5
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 4.0e-93 345.5 272 68.8
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 5.2e-93 345.1 229 74.2
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 6.8e-93 344.7 272 68.0
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 6.8e-93 344.7 271 68.6
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 6.8e-93 344.7 278 68.0
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 6.8e-93 344.7 253 71.5
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 1.2e-92 344.0 282 67.4
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 2.6e-92 342.8 238 72.7
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 3.4e-92 342.4 273 68.5
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 3.4e-92 342.4 275 69.1
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 4.4e-92 342.0 288 63.9
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 7.5e-92 341.3 243 73.3
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 9.8e-92 340.9 275 68.0
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 1.3e-91 340.5 271 69.4
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 1.3e-91 340.5 275 66.9
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.7e-91 340.1 271 67.9
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 3.7e-91 339.0 275 68.0
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 1.1e-90 337.4 250 71.2
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.1e-90 337.4 250 71.2
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 1.4e-90 337.0 271 65.7
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 1.8e-90 336.7 254 70.5
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 2.4e-90 336.3 282 65.2
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 2.4e-90 336.3 283 65.0
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 7.0e-90 334.7 237 72.2
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.2e-89 334.0 271 67.9
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 1.6e-89 333.6 233 73.0
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 3.5e-89 332.4 293 62.8
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 4.5e-89 332.0 236 72.9
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 5.9e-89 331.6 277 66.4
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 1.3e-88 330.5 291 61.9
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 4.7e-86 322.0 271 65.3
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 1.4e-85 320.5 219 76.3
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.4e-85 320.5 279 63.4
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 3.1e-85 319.3 240 69.2
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 3.1e-85 319.3 240 69.2
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 5.2e-85 318.5 273 61.9
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 6.8e-85 318.2 262 61.8
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 2.0e-84 316.6 218 73.4
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 2.6e-84 316.2 257 66.9
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 3.4e-84 315.8 225 74.2
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 9.8e-84 314.3 271 63.5
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 2.9e-83 312.8 274 65.0
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 3.5e-81 305.8 249 64.7
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 1.6e-78 297.0 263 62.4
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 8.0e-78 294.7 257 62.6
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 9.8e-76 287.7 241 63.9
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 8.3e-75 284.6 236 60.2
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 8.3e-75 284.6 228 64.0
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 4.1e-74 282.3 257 62.6
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 1.3e-72 277.3 219 65.3
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 8.9e-69 264.6 175 77.7
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 2.8e-62 243.0 174 70.7
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 5.8e-60 235.3 271 52.8
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 4.3e-55 219.2 215 55.3
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 4.8e-54 215.7 217 52.5
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 7.1e-50 201.8 277 47.7
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 7.8e-49 198.4 217 46.5
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 1.6e-38 164.1 253 43.9
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 6.2e-38 162.2 119 67.2
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 6.9e-37 158.7 244 45.1
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 4.5e-36 156.0 228 39.5
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 1.2e-33 147.9 215 37.7
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 3.2e-26 123.2 230 33.9
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 5.1e-24 115.9 75 74.7
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 7.4e-23 112.1 85 62.4
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 4.2e-18 96.3 104 51.0
MBI17_g35869_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 1.4e-16 91.3 100 52.0
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 3.1e-13 80.1 104 51.0
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 1.0e-11 75.1 65 55.4
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 3.0e-08 63.5 71 50.7
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 3.0e-08 63.5 71 50.7
SEGI_22360 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 3.9e-08 63.2 104 36.5
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 8.8e-08 62.0 71 49.3
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 3.7e-06 56.6 51 58.8


User provided reference genes

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