Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 0.0e+00 1174.5 642 100.0
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 0.0e+00 1078.9 665 90.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.4e-292 1009.2 641 86.3
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 7.4e-209 731.1 602 70.8
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 2.0e-169 600.1 650 55.5
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.4e-167 594.0 636 56.1
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 2.4e-167 593.2 648 55.6
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 7.0e-167 591.7 652 54.9
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.6e-163 580.5 640 55.3
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.8e-162 577.0 645 54.3
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.5e-161 573.9 651 52.4
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 3.4e-161 572.8 650 53.8
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 8.3e-160 568.2 650 52.3
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 8.3e-160 568.2 636 53.5
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 7.2e-156 555.1 653 52.1
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 2.0e-150 537.0 647 49.3
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 8.6e-149 531.6 655 49.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 7.3e-148 528.5 648 50.2
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.2e-147 527.7 631 52.1
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 2.8e-147 526.6 641 51.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 3.6e-147 526.2 647 47.9
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.0e-146 523.1 656 48.9
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 5.7e-145 518.8 629 51.5
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.2e-144 516.9 658 51.5
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 4.1e-143 512.7 669 47.8
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.3e-140 503.1 626 50.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 5.6e-140 502.3 658 48.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.1e-138 498.0 646 47.2
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 4.0e-138 496.1 638 49.1
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 5.2e-138 495.7 664 48.2
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 6.8e-138 495.4 639 48.8
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.8e-137 491.5 628 47.9
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.2e-135 486.5 624 48.2
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.1e-135 486.1 624 48.6
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.6e-134 484.2 659 45.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.7e-134 483.4 658 47.4
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 4.6e-134 482.6 613 46.3
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.5e-132 476.9 651 46.1
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 3.3e-132 476.5 623 48.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 7.3e-132 475.3 633 47.4
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.2e-131 472.2 657 44.3
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 8.1e-131 471.9 576 51.0
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 9.9e-129 464.9 656 44.7
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-127 460.7 623 45.7
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.6e-126 457.6 654 46.3
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.7e-125 454.1 639 47.3
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 5.1e-125 452.6 623 48.8
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 6.6e-125 452.2 627 46.4
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 6.6e-125 452.2 631 45.3
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 8.6e-125 451.8 647 47.4
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 7.3e-124 448.7 604 45.5
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 9.5e-124 448.4 657 45.8
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 2.8e-123 446.8 650 46.5
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 2.4e-122 443.7 652 46.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.5e-121 441.0 627 47.0
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 4.4e-121 439.5 529 50.1
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 5.8e-121 439.1 625 47.5
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.7e-120 437.6 666 43.1
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 6.0e-118 429.1 650 41.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.5e-116 424.5 653 42.0
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 2.8e-115 420.2 661 43.7
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 2.4e-114 417.2 630 44.6
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 7.6e-113 412.1 484 50.2
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-111 408.3 654 42.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 6.0e-110 402.5 660 44.5
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.3e-109 401.4 622 43.4
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.3e-109 401.4 704 40.1
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 3.0e-109 400.2 619 42.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 5.1e-109 399.4 631 43.4
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.6e-107 394.4 622 42.8
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 4.8e-107 392.9 639 43.0
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 9.0e-106 388.7 629 42.6
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.5e-105 387.9 644 41.3
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 1.1e-103 381.7 647 42.0
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 3.2e-103 380.2 642 39.4
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-102 377.9 653 41.5
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.6e-102 377.9 656 40.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 6.0e-102 375.9 657 40.2
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.9e-101 373.2 629 41.3
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.9e-101 373.2 549 43.5
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 2.5e-100 370.5 328 59.1
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.1e-99 367.5 653 39.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 2.8e-99 367.1 654 39.6
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 8.1e-99 365.5 644 41.1
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.5e-97 361.3 547 42.6
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 9.9e-97 358.6 643 41.7
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 4.9e-96 356.3 653 40.1
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 7.9e-94 349.0 397 48.4
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.8e-93 347.8 496 46.0
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.9e-93 346.7 666 38.7
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 6.2e-91 339.3 633 37.8
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.2e-89 335.1 314 55.4
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-88 331.6 321 53.9
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 4.8e-83 313.2 653 36.1
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.5e-81 308.1 280 53.6
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.4e-79 301.6 536 41.4
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 5.5e-79 299.7 537 41.2
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 7.9e-78 295.8 637 37.7
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 5.1e-77 293.1 444 43.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.9e-76 291.2 459 45.8
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-74 285.0 292 52.1
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 3.1e-74 283.9 277 52.3
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 6.9e-74 282.7 544 38.4
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 1.0e-72 278.9 642 33.2
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.0e-69 268.9 565 36.6
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 3.7e-67 260.4 227 55.9
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 6.9e-66 256.1 248 55.2
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.7e-64 251.5 634 33.4
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.0e-64 250.0 257 51.8
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.1e-58 232.3 319 42.3
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 5.3e-58 229.9 632 30.5
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 7.7e-57 226.1 539 33.8
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 2.9e-56 224.2 707 31.1
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.5e-55 221.9 262 48.9
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.7e-52 209.9 480 35.6
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.7e-51 208.4 278 46.4
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.2e-48 198.0 269 44.6
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.9e-47 194.9 173 52.6
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 4.7e-46 190.3 177 52.5
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 7.5e-44 183.0 366 41.8
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.8e-43 181.0 148 60.8
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.1e-42 176.0 396 39.9
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.3e-37 161.4 265 40.4
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.4e-34 151.4 327 39.1
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 5.9e-33 146.7 119 56.3
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 2.3e-32 144.8 257 30.4
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.3e-32 144.8 120 55.0
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 5.0e-32 143.7 167 38.9
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.5e-31 141.4 398 35.7
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 5.8e-28 130.2 230 38.7
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 5.8e-28 130.2 268 31.7
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.3e-27 129.0 487 31.8
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.9e-27 127.9 432 32.2
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.4e-26 123.6 243 36.6
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.5e-25 120.9 145 48.3
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 6.0e-25 120.2 151 53.6
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.9e-24 117.5 263 41.1
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 5.0e-24 117.1 205 34.6
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.6e-24 116.7 87 54.0
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.5e-23 114.8 123 49.6
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 2.5e-23 114.8 314 28.7
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.2e-22 112.5 286 31.5
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.1e-22 111.7 82 62.2
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 4.0e-21 107.5 240 34.2
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.6e-20 104.8 145 42.1
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 6.4e-19 100.1 197 33.5
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 4.1e-18 97.4 212 32.1
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 5.4e-18 97.1 234 41.9
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.7e-17 94.7 78 52.6
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.1e-15 89.4 110 43.6
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.1e-15 89.4 546 24.2
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.2e-14 85.9 237 35.0
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 2.8e-14 84.7 200 30.5
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 3.6e-14 84.3 197 29.4
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 3.6e-14 84.3 119 41.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 6.2e-14 83.6 80 52.5
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 3.1e-13 81.3 189 27.5
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 4.0e-13 80.9 71 53.5
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 5.2e-13 80.5 189 29.1
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 5.2e-13 80.5 189 29.1
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 2.6e-12 78.2 161 31.7
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.4e-12 77.4 69 56.5
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 7.5e-12 76.6 52 65.4
MELO3C033658.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.7e-11 75.5 81 56.8
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 6.4e-11 73.6 156 32.1
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.4e-10 72.4 51 64.7
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.1e-09 68.6 150 34.0
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 7.8e-09 66.6 143 34.3
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 6.6e-08 63.5 150 29.3
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 8.6e-08 63.2 66 51.5
QL93p0107_0801 Quercus lobata HOM05D003570 ORTHO05D004207 1.9e-07 62.0 137 34.3
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.5e-07 61.6 134 36.6
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.3e-07 60.1 111 33.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 9.5e-07 59.7 70 41.4


User provided reference genes

Program Settings