Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 6.6e-75 283.9 137 100.0
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 2.6e-47 192.2 92 94.6
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 1.1e-45 186.8 137 70.1
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 1.7e-41 172.9 92 84.8
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 3.7e-41 171.8 88 87.5
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 4.8e-41 171.4 92 83.7
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 4.8e-41 171.4 92 83.7
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 6.3e-41 171.0 92 83.7
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 8.2e-41 170.6 90 84.4
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.1e-40 170.2 92 82.6
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.1e-40 170.2 92 82.6
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.4e-40 169.1 92 83.7
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 3.1e-40 168.7 94 79.8
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 4.1e-40 168.3 85 87.1
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 9.1e-40 167.2 92 79.3
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 9.1e-40 167.2 92 81.5
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 9.1e-40 167.2 85 83.5
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.5e-39 166.4 93 79.6
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 2.0e-39 166.0 92 80.4
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 2.6e-39 165.6 92 80.4
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 2.6e-39 165.6 85 85.9
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 3.4e-39 165.2 84 84.5
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 3.4e-39 165.2 85 84.7
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 4.5e-39 164.9 84 85.7
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 5.9e-39 164.5 85 84.7
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 5.9e-39 164.5 93 78.5
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 7.7e-39 164.1 84 85.7
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 7.7e-39 164.1 92 80.4
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 7.7e-39 164.1 85 83.5
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 1.0e-38 163.7 92 80.4
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.0e-38 163.7 84 85.7
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.0e-38 163.7 86 81.4
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.0e-38 163.7 86 81.4
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 1.3e-38 163.3 90 78.9
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.7e-38 162.9 85 82.4
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 2.9e-38 162.2 85 82.4
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.9e-38 162.2 89 80.9
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 6.5e-38 161.0 88 78.4
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 6.5e-38 161.0 85 81.2
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 8.5e-38 160.6 92 79.3
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 1.1e-37 160.2 87 79.3
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 1.1e-37 160.2 94 75.5
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.4e-37 159.8 92 77.2
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.4e-37 159.8 84 83.3
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.4e-37 159.8 84 83.3
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 1.4e-37 159.8 84 83.3
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 1.4e-37 159.8 92 76.1
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.4e-37 159.8 85 81.2
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 1.9e-37 159.5 83 84.3
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 3.2e-37 158.7 90 77.8
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 3.2e-37 158.7 86 79.1
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 4.2e-37 158.3 84 79.8
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 4.2e-37 158.3 86 81.4
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 7.2e-37 157.5 85 81.2
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 7.2e-37 157.5 84 81.0
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 7.2e-37 157.5 84 79.8
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 9.4e-37 157.1 90 75.6
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 1.2e-36 156.8 90 76.7
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 1.6e-36 156.4 91 74.7
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 1.6e-36 156.4 90 77.8
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 1.6e-36 156.4 84 83.3
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 2.7e-36 155.6 90 74.4
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 2.7e-36 155.6 93 74.2
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 3.6e-36 155.2 83 84.3
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 3.6e-36 155.2 83 84.3
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 4.7e-36 154.8 108 67.6
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 4.7e-36 154.8 87 78.2
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 4.7e-36 154.8 79 84.8
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.7e-36 154.8 87 77.0
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 7.9e-36 154.1 85 76.5
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 7.9e-36 154.1 87 77.0
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 7.9e-36 154.1 87 77.0
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 7.9e-36 154.1 92 78.3
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 7.9e-36 154.1 81 82.7
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.0e-35 153.7 92 77.2
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 1.4e-35 153.3 91 72.5
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 1.4e-35 153.3 86 77.9
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 2.3e-35 152.5 91 74.7
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 3.0e-35 152.1 93 73.1
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 3.9e-35 151.8 90 74.4
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 3.9e-35 151.8 85 77.6
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 5.1e-35 151.4 90 74.4
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 5.1e-35 151.4 90 74.4
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 5.1e-35 151.4 90 74.4
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 5.1e-35 151.4 90 74.4
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 5.1e-35 151.4 90 73.3
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 8.8e-35 150.6 86 74.4
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 1.1e-34 150.2 85 76.5
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-34 150.2 92 72.8
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-34 150.2 90 73.3
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-34 150.2 92 72.8
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.1e-34 150.2 92 72.8
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 1.5e-34 149.8 85 76.5
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 3.3e-34 148.7 85 75.3
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 3.3e-34 148.7 85 75.3
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 5.7e-34 147.9 83 75.9
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 5.7e-34 147.9 84 75.0
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 7.4e-34 147.5 87 72.4
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 1.3e-33 146.7 85 74.1
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 2.2e-33 146.0 83 74.7
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 8.2e-33 144.1 84 72.6
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 1.5e-31 139.8 69 84.1
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 2.0e-31 139.4 88 68.2
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 3.5e-31 138.7 83 77.1
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 5.0e-30 134.8 83 71.1
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 6.5e-30 134.4 83 68.7
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 1.1e-29 133.7 78 73.1
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 5.5e-29 131.3 90 66.7
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 9.4e-29 130.6 89 66.3
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 1.2e-28 130.2 87 65.5
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 2.1e-28 129.4 90 65.6
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 2.7e-28 129.0 71 73.2
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.8e-27 126.3 93 63.4
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.7e-25 119.8 89 61.8
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 2.2e-25 119.4 84 64.3
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 3.7e-25 118.6 93 59.1
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.5e-21 106.7 58 75.9
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 2.1e-20 102.8 84 51.2
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.2e-19 98.2 70 64.3
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 5.2e-19 98.2 70 64.3
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 3.4e-18 95.5 89 44.9
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 4.8e-17 91.7 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 2.9e-14 82.4 78 46.2
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 5.0e-14 81.6 42 73.8
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 4.7e-12 75.1 85 40.0
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.8e-08 63.2 41 75.6
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 5.4e-08 61.6 86 46.5
arahy.Tifrunner.gnm1.ann1.BFR0IC Arachis hypogaea HOM05D005988 ORTHO05D007392 2.9e-06 55.8 56 42.9


User provided reference genes

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