Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 4.5e-142 508.1 286 100.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 4.5e-142 508.1 286 100.0
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.5e-126 455.3 286 87.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.6e-123 445.3 286 89.2
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 8.0e-123 444.1 285 85.6
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-122 443.0 285 84.9
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.3e-122 442.6 286 85.7
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.5e-121 439.9 285 86.3
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.6e-121 439.1 286 86.7
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 9.8e-121 437.2 285 84.6
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 9.8e-121 437.2 285 86.7
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.7e-120 436.4 286 84.6
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.7e-120 436.4 286 85.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 6.4e-120 434.5 296 81.8
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 8.3e-120 434.1 286 85.0
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-119 433.7 286 83.2
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.1e-119 433.7 285 85.3
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-119 433.3 285 83.5
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.8e-119 433.0 286 83.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.8e-119 433.0 286 85.3
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.4e-119 431.4 288 83.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 5.4e-119 431.4 285 83.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 9.2e-119 430.6 286 82.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.2e-118 430.3 286 86.0
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.7e-118 429.1 286 82.9
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.5e-118 428.7 286 82.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 5.9e-118 427.9 237 84.8
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.0e-117 425.6 286 82.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.9e-117 425.2 306 79.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.9e-117 425.2 285 82.8
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.9e-117 425.2 286 82.2
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.0e-117 424.9 285 84.2
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.6e-117 424.5 285 81.8
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-116 423.7 285 82.1
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.5e-116 423.3 288 84.0
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.5e-116 422.5 285 82.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.3e-116 422.2 285 82.5
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.5e-116 420.6 285 81.1
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.8e-115 419.1 286 84.6
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.2e-115 417.9 287 82.6
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 8.0e-115 417.5 286 81.1
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 8.0e-115 417.5 287 84.0
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.0e-114 417.2 286 82.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.8e-113 411.4 289 82.0
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.2e-112 409.5 286 78.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.9e-111 406.4 285 78.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.6e-110 403.3 286 78.0
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.0e-110 402.9 286 79.4
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 2.7e-110 402.5 285 81.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.6e-110 401.7 285 80.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 6.0e-110 401.4 285 80.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.0e-109 399.1 286 78.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 5.0e-109 398.3 287 79.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.3e-108 395.6 285 79.3
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.3e-108 395.2 235 79.6
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.3e-108 394.4 283 78.1
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.1e-106 390.6 239 78.2
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-106 390.6 267 81.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.4e-106 390.2 289 79.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 2.3e-106 389.4 235 76.6
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 2.0e-105 386.3 286 80.4
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.0e-105 386.3 286 78.7
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.0e-105 386.3 286 78.3
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 3.4e-105 385.6 285 77.9
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.4e-105 385.2 231 78.4
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 7.5e-105 384.4 284 78.9
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.9e-104 381.7 289 78.2
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.2e-103 379.0 285 77.9
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.7e-102 375.9 288 76.4
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 3.5e-102 375.6 288 75.7
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 6.0e-102 374.8 289 75.4
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.0e-101 374.0 286 75.5
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.0e-101 374.0 293 76.8
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.0e-101 374.0 237 77.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.0e-101 372.5 293 76.5
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 3.0e-101 372.5 289 75.1
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.9e-101 372.1 210 85.2
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.6e-101 371.3 342 66.4
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-100 370.2 237 75.5
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.9e-100 369.8 286 74.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 3.3e-100 369.0 292 75.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-99 366.7 240 75.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.1e-99 366.3 239 73.2
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.8e-99 365.9 272 67.6
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 6.2e-99 364.8 288 71.9
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.3e-98 362.8 285 74.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.3e-98 362.8 287 74.2
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.1e-98 362.5 285 78.2
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.0e-97 359.8 240 72.5
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.0e-97 359.8 291 74.2
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 5.8e-97 358.2 237 73.4
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 7.6e-97 357.8 240 72.5
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.9e-96 355.1 286 70.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.1e-95 354.0 210 80.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.2e-95 352.4 234 70.9
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.6e-94 350.1 237 70.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-94 350.1 260 68.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.9e-93 345.5 286 72.7
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 5.6e-92 341.7 240 71.2
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 9.6e-92 340.9 285 73.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 9.6e-92 340.9 268 74.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.6e-91 340.1 243 83.1
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 5.2e-90 335.1 235 69.4
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 2.6e-89 332.8 292 70.5
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 2.6e-89 332.8 217 71.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 1.9e-87 326.6 287 69.3
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 9.3e-87 324.3 231 82.7
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 3.9e-85 318.9 245 68.6
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 5.1e-85 318.5 289 70.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 7.3e-84 314.7 247 67.6
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 7.3e-84 314.7 294 68.0
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.3e-83 313.9 294 68.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-82 310.8 244 67.6
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 5.3e-82 308.5 243 66.3
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-81 307.4 235 66.8
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.0e-81 306.6 243 67.1
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 4.4e-81 305.4 235 66.0
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 7.6e-81 304.7 297 67.0
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 9.9e-81 304.3 295 67.1
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 9.9e-81 304.3 196 76.0
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.2e-80 303.1 229 77.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 4.9e-80 302.0 233 66.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.9e-77 292.4 193 73.1
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.0e-74 282.3 229 74.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.7e-72 276.9 241 61.4
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 8.4e-72 274.6 217 64.1
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.8e-67 259.6 238 59.7
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.4e-66 256.5 234 59.8
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 5.8e-65 251.9 241 57.3
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.7e-64 250.4 195 62.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.3e-59 231.9 235 54.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 3.2e-47 193.0 201 51.7
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 8.8e-45 184.9 245 59.6
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 3.7e-43 179.5 131 67.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.6e-36 156.8 242 42.1
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 5.3e-34 149.1 248 42.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-31 141.4 240 40.8
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 2.5e-31 140.2 241 38.6
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 5.2e-29 132.5 228 40.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 6.7e-29 132.1 187 49.2
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.7e-27 126.3 222 37.4
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 8.2e-27 125.2 226 37.6
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.1e-26 124.8 227 38.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.2e-25 121.3 227 35.7
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.7e-25 118.6 231 34.2
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.3e-24 117.9 233 37.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.2e-24 117.1 224 35.3
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.2e-24 117.1 227 34.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.5e-24 115.2 234 36.8
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-23 114.8 238 35.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 4.2e-23 112.8 231 36.8
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 3.6e-22 109.8 53 94.3
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.4e-21 107.8 215 34.9
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 3.0e-21 106.7 226 34.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 5.2e-21 105.9 246 32.1
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 8.8e-21 105.1 231 34.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 8.3e-19 98.6 230 36.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.7e-17 93.6 260 31.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.8e-16 89.7 204 34.8
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 8.5e-16 88.6 56 71.4
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.5e-15 87.8 205 34.6
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.2e-15 85.5 46 82.6
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 4.7e-14 82.8 49 73.5
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 4.7e-14 82.8 261 29.9
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 6.1e-14 82.4 173 34.7
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 5.2e-13 79.3 168 35.1
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.5e-12 77.8 103 41.7
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.8e-11 73.6 169 34.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.8e-10 70.9 168 33.3
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.1e-10 70.1 243 28.8
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 5.9e-09 65.9 51 54.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-08 65.1 51 52.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.7e-08 64.3 48 56.2
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.5e-07 60.5 41 61.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 9.5e-07 58.5 57 47.4


User provided reference genes

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