Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.1e-189 666.4 329 100.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.6e-128 461.5 318 75.2
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.6e-127 458.8 318 74.5
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 7.5e-125 451.1 318 73.6
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 6.6e-121 438.0 305 73.4
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 4.7e-119 431.8 320 69.7
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.4e-117 425.6 317 67.5
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.3e-116 423.7 317 67.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.9e-116 422.5 317 67.2
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 3.8e-116 422.2 306 69.3
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 4.9e-116 421.8 318 67.3
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.4e-115 420.2 317 66.9
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 4.1e-115 418.7 322 68.0
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 7.1e-115 417.9 319 66.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.6e-114 416.8 320 65.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.6e-114 416.8 317 65.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.5e-114 415.6 322 64.9
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.5e-114 415.6 317 65.9
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 4.6e-114 415.2 315 67.9
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.3e-113 413.7 311 66.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.7e-113 413.3 325 64.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.1e-113 411.8 317 65.3
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.1e-113 411.8 311 67.2
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 6.6e-113 411.4 330 63.9
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 8.7e-113 411.0 323 65.0
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.1e-112 410.6 328 63.7
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.5e-112 410.2 323 64.7
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.5e-112 410.2 331 62.5
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.5e-112 410.2 318 65.1
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.3e-112 408.7 329 62.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.6e-111 406.8 311 65.3
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.6e-111 406.8 329 63.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.1e-111 406.4 335 63.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 2.8e-111 406.0 324 63.3
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.2e-111 404.8 312 66.0
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.2e-111 404.8 321 65.4
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 8.1e-111 404.4 335 64.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 8.1e-111 404.4 321 64.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.1e-110 404.1 316 65.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.4e-110 402.9 313 67.7
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 6.9e-110 401.4 336 62.2
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.9e-110 401.4 326 62.9
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 9.0e-110 401.0 319 65.5
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 9.0e-110 401.0 319 65.5
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 9.0e-110 401.0 326 62.9
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 9.0e-110 401.0 326 62.9
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.2e-109 400.6 316 63.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.0e-109 399.8 308 65.3
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.0e-109 399.8 316 63.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-109 399.8 366 58.5
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.6e-109 399.4 320 64.1
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 3.4e-109 399.1 318 64.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.4e-109 399.1 312 63.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.4e-109 398.7 325 63.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.4e-109 398.7 316 64.6
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.8e-109 398.3 324 63.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 5.8e-109 398.3 315 62.9
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 7.6e-109 397.9 315 64.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 7.6e-109 397.9 308 65.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 9.9e-109 397.5 318 64.2
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.3e-108 397.1 324 64.5
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.7e-108 396.7 325 64.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.2e-108 396.4 325 62.8
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.2e-108 396.4 316 63.9
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-108 396.4 316 63.9
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.8e-108 395.6 324 64.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 3.8e-108 395.6 319 61.8
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.4e-108 394.8 318 63.2
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 8.4e-108 394.4 325 63.7
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 8.4e-108 394.4 325 63.7
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.4e-108 394.4 331 61.0
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.1e-107 394.0 361 57.3
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.4e-107 393.7 317 62.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.4e-107 392.9 318 62.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.4e-107 392.9 318 62.9
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.4e-107 392.9 320 62.2
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 4.2e-107 392.1 311 65.6
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.1e-107 391.3 304 64.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 9.3e-107 391.0 320 61.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.2e-106 390.6 313 63.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.7e-106 389.4 310 63.2
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.9e-105 385.6 360 57.5
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-104 384.0 331 60.7
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.1e-104 384.0 308 62.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-104 383.3 331 61.0
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.6e-103 380.2 316 61.4
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 5.3e-102 375.2 402 54.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 6.9e-102 374.8 311 60.8
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 9.0e-102 374.4 311 59.8
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 2.0e-101 373.2 292 65.1
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.5e-101 372.1 360 55.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.1e-98 363.2 323 56.7
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.9e-97 359.0 319 58.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 4.3e-96 355.5 324 59.0
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.3e-94 348.6 304 58.9
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 5.1e-89 332.0 320 53.1
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.4e-88 328.2 323 53.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.9e-84 316.2 318 50.3
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.2e-83 312.8 336 48.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-81 307.0 365 51.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.3e-80 302.8 310 52.6
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 2.8e-79 299.7 248 61.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.4e-78 297.4 236 63.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 4.1e-78 295.8 318 53.1
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.9e-78 295.0 239 61.5
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.3e-76 290.8 249 61.0
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.2e-76 290.0 248 58.9
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.9e-72 276.9 318 49.1
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 6.9e-70 268.5 232 57.8
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.3e-68 264.2 314 46.5
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.7e-63 246.1 229 56.3
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.7e-60 237.3 184 62.0
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.7e-50 203.4 213 54.5
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.0e-49 199.9 337 36.5
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.7e-45 186.8 195 48.2
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 5.0e-44 182.6 267 40.1
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.0e-41 174.9 133 64.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.3e-41 173.7 200 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.7e-39 166.4 170 48.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 8.3e-39 165.2 121 67.8
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 8.6e-36 155.2 118 61.9
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-30 135.6 147 44.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.6e-29 134.4 128 55.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-29 134.4 128 55.5
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.9e-29 132.5 131 54.2
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.0e-28 129.4 124 55.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.0e-28 129.4 124 55.6
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.3e-27 126.3 106 64.2
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.6e-27 125.9 124 54.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 9.5e-27 125.2 117 55.6
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.1e-22 111.7 94 60.6
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 5.4e-22 109.4 93 59.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.6e-21 106.3 203 40.4
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.3e-19 99.0 66 75.8
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.1e-17 93.6 75 58.7
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.5e-16 91.3 64 70.3
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.9e-14 84.3 58 69.0
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.9e-14 84.3 82 50.0
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 4.6e-13 79.7 68 57.4
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 6.0e-13 79.3 70 55.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.3e-12 78.2 53 73.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 6.6e-12 75.9 66 62.1
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 4.4e-08 63.2 195 31.3


User provided reference genes

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