Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 0.0e+00 2080.4 1055 100.0
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 0.0e+00 1713.4 1042 83.6
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 0.0e+00 1337.4 1018 69.2
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 0.0e+00 1318.9 824 84.7
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 6.9e-172 609.0 1087 38.7
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 3.4e-171 606.7 1117 37.7
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 5.9e-163 579.3 1115 37.9
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 1.8e-159 567.8 1044 39.1
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 4.0e-159 566.6 1091 37.3
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 6.7e-159 565.8 1148 36.9
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 7.2e-145 519.2 1151 36.2
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 4.7e-144 516.5 1090 36.9
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 7.5e-142 509.2 1110 34.9
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 1.3e-141 508.4 1102 34.1
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 1.4e-140 505.0 1090 34.9
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 1.8e-140 504.6 1090 34.2
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 7.0e-140 502.7 1090 34.9
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.2e-139 501.9 1106 35.2
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 1.9e-137 494.6 1102 34.6
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 7.2e-137 492.7 1089 35.5
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 3.6e-136 490.3 1126 34.5
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 1.8e-135 488.0 1119 32.9
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.7e-133 481.5 1092 33.9
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 2.2e-133 481.1 1076 33.5
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 1.2e-131 475.3 1075 33.1
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 1.0e-127 462.2 1171 32.6
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 1.1e-124 452.2 1136 33.1
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.3e-122 445.3 1132 32.9
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 8.6e-122 442.6 1124 33.8
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 1.5e-121 441.8 993 35.0
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 6.8e-119 433.0 1156 32.2
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 5.8e-118 429.9 1140 31.4
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 4.9e-117 426.8 1103 32.4
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 1.1e-116 425.6 1032 33.8
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 1.1e-116 425.6 1129 32.5
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 2.4e-116 424.5 1169 32.2
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 7.1e-116 422.9 898 35.7
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 1.3e-114 418.7 924 34.3
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 9.5e-113 412.5 1199 31.3
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 8.1e-112 409.5 1282 29.3
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 1.2e-110 405.6 1075 33.7
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 2.0e-110 404.8 889 36.0
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 2.6e-110 404.4 1019 33.9
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 4.9e-109 400.2 1096 32.3
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 1.1e-108 399.1 1019 33.6
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.4e-108 398.7 1074 33.6
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 2.4e-108 397.9 1187 30.7
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 7.1e-108 396.4 1127 31.8
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 6.0e-107 393.3 1082 32.1
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 3.1e-103 380.9 1096 29.7
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 1.7e-101 375.2 1107 31.1
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 4.9e-101 373.6 1059 31.5
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 1.2e-99 369.0 1140 30.2
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 3.5e-99 367.5 1038 31.7
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 6.6e-98 363.2 1149 29.2
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 8.7e-98 362.8 1051 30.9
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 2.0e-94 351.7 1084 29.7
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 5.8e-94 350.1 1143 29.3
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 1.4e-92 345.5 922 32.8
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 1.9e-92 345.1 1167 29.9
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.4e-84 318.9 1034 28.7
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 2.9e-77 294.7 578 36.7
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 8.4e-77 293.1 874 30.7
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 1.8e-74 285.4 853 32.0
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 4.5e-70 270.8 1066 27.1
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 1.3e-69 269.2 863 30.1
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 8.4e-69 266.5 982 28.1
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 1.9e-68 265.4 358 41.3
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 3.6e-67 261.2 306 47.1
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 6.7e-66 256.9 959 28.6
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 1.3e-61 242.7 583 32.6
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 3.8e-61 241.1 995 28.2
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 8.5e-61 240.0 987 27.5
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 7.2e-60 236.9 998 28.5
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 2.0e-54 218.8 280 42.5
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 1.1e-52 213.0 611 29.6
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 9.7e-49 199.9 181 56.4
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 3.7e-48 198.0 835 27.1
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 4.4e-41 174.5 838 26.5
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 2.9e-37 161.8 615 28.3
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.1e-36 159.8 154 50.0
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 9.8e-33 146.7 712 26.4
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 3.7e-32 144.8 145 49.7
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 9.5e-28 130.2 461 30.2
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 7.3e-20 104.0 95 57.9
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 2.1e-19 102.4 97 54.6
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 6.4e-16 90.9 64 64.1
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 3.9e-13 81.6 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.2306 Anthoceros agrestis HOM05D007594 ORTHO05D009607 1.2e-11 76.6 150 27.3
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 8.0e-11 73.9 83 43.4
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 8.0e-11 73.9 67 58.2
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 3.4e-09 68.6 147 36.7
CBR_g49793 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-08 66.2 100 31.0
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 4.1e-07 61.6 60 43.3
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 6.0e-06 57.8 388 27.6


User provided reference genes

Program Settings