Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.6e-85 319.3 152 100.0
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.4e-81 306.2 152 94.1
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.3e-67 258.1 187 68.4
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.1e-65 253.4 148 79.7
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.2e-58 229.2 152 70.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 4.8e-58 228.0 138 73.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.4e-57 225.7 145 73.1
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 3.1e-57 225.3 139 72.7
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.1e-57 225.3 143 69.9
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 5.3e-57 224.6 161 65.8
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 9.0e-57 223.8 150 68.7
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.5e-56 223.0 140 71.4
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 2.0e-56 222.6 143 72.7
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.0e-56 222.6 143 69.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.6e-56 222.2 140 71.4
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 3.4e-56 221.9 151 69.5
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.7e-56 220.7 140 72.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.0e-55 220.3 161 64.6
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 2.2e-55 219.2 140 72.1
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.8e-55 218.4 150 68.0
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.0e-55 218.0 146 68.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 6.5e-55 217.6 142 71.8
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 6.5e-55 217.6 137 70.8
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.1e-54 216.9 143 72.0
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 7.2e-54 214.2 142 66.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.2e-54 214.2 142 66.9
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-53 213.0 142 66.2
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-53 212.6 148 64.2
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 3.6e-53 211.8 144 69.4
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 3.6e-53 211.8 145 66.9
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.6e-53 211.5 140 69.3
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 6.1e-53 211.1 143 67.1
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.9e-53 210.7 141 70.9
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 7.9e-53 210.7 144 70.1
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.8e-52 209.5 143 67.8
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 2.3e-52 209.1 144 68.8
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 2.3e-52 209.1 144 68.8
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.3e-52 209.1 149 64.4
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 3.0e-52 208.8 138 69.6
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.1e-52 208.0 142 66.9
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 5.1e-52 208.0 142 66.9
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 6.7e-52 207.6 144 66.7
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 8.8e-52 207.2 136 69.1
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 8.8e-52 207.2 138 68.8
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 8.8e-52 207.2 144 66.7
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.0e-51 206.1 142 65.5
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.6e-51 205.7 137 69.3
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 2.6e-51 205.7 138 70.3
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 3.3e-51 205.3 138 70.3
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.3e-51 205.3 144 65.3
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.3e-51 205.3 144 65.3
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 5.7e-51 204.5 145 67.6
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 7.4e-51 204.1 138 69.6
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 9.7e-51 203.8 138 69.6
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-50 203.4 149 64.4
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.7e-50 203.0 136 67.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.8e-50 202.2 138 69.6
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 2.8e-50 202.2 145 64.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.7e-50 201.8 142 64.1
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 3.7e-50 201.8 144 68.1
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 8.2e-50 200.7 138 68.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.8e-49 199.5 138 64.5
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 4.1e-49 198.4 142 66.2
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.3e-49 198.0 150 61.3
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.3e-49 198.0 149 60.4
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 9.1e-49 197.2 144 62.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.0e-48 196.1 149 62.4
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-48 196.1 137 65.7
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 4.5e-48 194.9 138 64.5
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 4.5e-48 194.9 140 63.6
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.5e-48 194.9 140 63.6
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 4.5e-48 194.9 151 62.9
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 5.9e-48 194.5 148 63.5
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.7e-48 194.1 145 64.1
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.7e-48 194.1 145 64.1
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.7e-48 194.1 143 62.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-48 194.1 139 64.0
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-48 194.1 139 64.0
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 7.7e-48 194.1 139 64.0
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.0e-47 193.7 145 62.8
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.3e-47 193.4 139 61.9
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.7e-47 193.0 142 65.5
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.2e-47 192.6 149 61.7
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.2e-47 192.6 142 64.8
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.9e-47 192.2 145 60.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 2.9e-47 192.2 154 63.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 5.0e-47 191.4 147 60.5
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.0e-47 191.4 147 60.5
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 5.0e-47 191.4 136 65.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 5.0e-47 191.4 139 62.6
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 6.5e-47 191.0 140 62.9
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-46 190.3 150 60.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.4e-46 189.9 137 66.4
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.9e-46 189.5 137 60.6
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.9e-46 189.5 141 64.5
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-46 189.5 144 63.2
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.5e-46 189.1 137 65.0
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.5e-46 189.1 143 64.3
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.5e-46 189.1 143 64.3
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.2e-46 188.7 150 59.3
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.2e-46 188.7 142 62.0
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 5.5e-46 188.0 150 59.3
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 5.5e-46 188.0 150 63.3
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 7.2e-46 187.6 142 59.9
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.2e-46 187.6 140 62.1
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 9.4e-46 187.2 145 57.9
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 9.4e-46 187.2 145 57.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 2.1e-45 186.0 138 60.1
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.6e-45 185.3 142 59.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 3.6e-45 185.3 145 64.1
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 4.7e-45 184.9 140 61.4
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 7.9e-45 184.1 139 61.2
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 2.3e-44 182.6 136 63.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 6.7e-44 181.0 149 59.1
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 8.8e-44 180.6 131 64.1
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 3.3e-43 178.7 147 60.5
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 4.4e-43 178.3 139 61.2
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-42 176.4 151 58.9
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-42 176.0 139 62.6
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 3.7e-42 175.3 139 59.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 6.3e-42 174.5 138 57.2
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.4e-41 173.3 132 61.4
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 1.2e-40 170.2 141 58.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-40 170.2 142 58.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.0e-40 169.5 139 55.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.9e-40 167.9 139 57.6
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.7e-39 166.4 140 57.9
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.2e-39 166.0 138 55.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.9e-39 165.6 143 56.6
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.9e-39 165.6 150 54.0
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.8e-39 165.2 139 56.1
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 8.5e-39 164.1 146 54.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.1e-38 163.7 141 56.7
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-38 163.7 98 70.4
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.2e-38 161.8 144 56.9
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.5e-38 161.4 216 42.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.3e-36 156.0 144 55.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 4.0e-36 155.2 141 52.5
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 6.7e-36 154.5 142 54.2
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 1.2e-35 153.7 137 55.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 3.3e-35 152.1 118 66.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 9.7e-35 150.6 139 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.7e-34 149.8 141 50.4
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 3.1e-33 145.6 145 49.7
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 3.1e-33 145.6 139 53.2
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 4.1e-33 145.2 139 48.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.6e-32 143.3 98 62.2
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.6e-32 143.3 150 50.0
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 4.5e-32 141.7 149 48.3
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.7e-31 139.8 116 60.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.6e-29 133.3 138 47.8
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.0e-27 126.3 141 46.8
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.2e-26 122.9 129 50.4
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.8e-21 105.9 142 43.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.5e-19 100.1 75 66.7
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.7e-18 95.5 71 54.9
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.9e-18 95.1 119 40.3
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.9e-18 95.1 105 50.5
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.8e-17 93.2 134 41.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-17 92.0 53 62.3
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 4.5e-16 88.6 50 66.0
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-15 86.7 88 55.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 2.9e-15 85.9 66 68.2
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 6.6e-15 84.7 103 45.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-14 83.6 66 66.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.2e-13 80.5 75 58.7
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 2.9e-10 69.3 39 61.5
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 3.7e-10 68.9 63 58.7
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 6.6e-07 58.2 71 49.3


User provided reference genes

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