Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 9.8e-109 396.7 190 100.0
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 7.8e-82 307.4 190 81.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 2.7e-74 282.3 190 73.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.6e-69 265.8 190 72.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.2e-60 236.1 203 62.1
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.1e-38 164.1 203 45.8
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 6.9e-38 161.4 206 46.1
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 9.0e-38 161.0 213 43.2
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 2.0e-37 159.8 197 45.2
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-36 157.5 206 46.1
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-36 157.5 206 46.1
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.8e-36 155.6 210 43.3
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 3.8e-36 155.6 223 42.2
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.9e-35 153.3 203 41.9
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.9e-35 153.3 193 47.7
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 3.2e-35 152.5 194 46.4
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.2e-35 152.1 203 41.9
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 5.5e-35 151.8 198 44.4
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 9.3e-35 151.0 207 43.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.2e-34 150.6 222 41.4
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.2e-34 150.6 219 40.2
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.6e-34 150.2 194 45.4
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.1e-34 149.8 211 41.2
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.1e-34 149.8 207 42.0
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 4.6e-34 148.7 191 45.5
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 6.0e-34 148.3 196 41.3
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.9e-34 147.9 91 69.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 7.9e-34 147.9 88 73.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.0e-33 147.5 193 44.0
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.3e-33 147.1 209 40.2
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.3e-33 147.1 220 43.6
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.8e-33 146.7 209 45.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.9e-33 145.6 194 45.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 6.7e-33 144.8 184 44.6
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.7e-33 144.8 202 45.5
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 8.7e-33 144.4 190 47.4
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.1e-32 144.1 186 45.7
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.9e-32 143.3 231 41.6
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.3e-32 142.1 222 42.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 5.7e-32 141.7 86 68.6
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.7e-32 141.7 128 56.2
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 5.7e-32 141.7 225 37.8
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 9.6e-32 141.0 206 44.2
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 1.3e-31 140.6 186 43.5
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 2.1e-31 139.8 186 44.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 2.8e-31 139.4 86 72.1
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 3.7e-31 139.0 206 43.2
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 6.3e-31 138.3 210 42.9
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.2e-31 137.9 198 42.4
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.1e-30 137.5 192 44.3
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.4e-30 136.3 123 56.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 3.1e-30 136.0 205 41.0
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 9.0e-30 134.4 84 70.2
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 9.0e-30 134.4 86 69.8
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.5e-29 133.7 86 67.4
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.0e-29 133.3 86 68.6
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.6e-29 132.9 86 66.3
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.5e-29 132.1 185 40.5
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.5e-29 132.1 114 55.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 4.5e-29 132.1 86 69.8
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 5.9e-29 131.7 185 40.5
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 7.6e-29 131.3 187 40.1
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 7.6e-29 131.3 86 68.6
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.0e-28 131.0 210 41.9
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-28 130.6 114 54.4
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.7e-28 130.2 87 69.0
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.7e-28 130.2 88 69.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.2e-28 129.8 94 62.8
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.2e-28 129.8 86 72.1
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-28 129.4 84 67.9
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.9e-28 129.4 84 71.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 2.9e-28 129.4 189 39.2
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.9e-28 129.4 128 53.9
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 5.0e-28 128.6 201 41.8
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 5.0e-28 128.6 210 39.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 5.0e-28 128.6 203 39.4
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 6.5e-28 128.3 86 68.6
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 6.5e-28 128.3 86 68.6
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.5e-28 128.3 90 63.3
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 8.4e-28 127.9 86 67.4
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 8.4e-28 127.9 86 68.6
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 8.4e-28 127.9 92 59.8
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 8.4e-28 127.9 94 61.7
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-28 127.9 89 64.0
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-28 127.9 89 64.0
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 8.4e-28 127.9 202 42.1
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.1e-27 127.5 191 44.5
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-27 127.5 86 68.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.5e-27 126.3 128 52.3
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.2e-27 125.6 114 52.6
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 5.5e-27 125.2 220 39.1
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 7.2e-27 124.8 86 62.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 7.2e-27 124.8 86 65.1
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.9e-26 121.3 89 61.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 1.3e-25 120.6 86 61.6
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-25 119.8 86 66.3
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 5.1e-25 118.6 187 38.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.3e-24 115.9 84 61.9
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 3.3e-24 115.9 110 54.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 3.3e-24 115.9 110 54.5
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 4.3e-24 115.5 110 53.6
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 4.3e-24 115.5 110 53.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 9.7e-24 114.4 225 39.6
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 9.7e-24 114.4 223 32.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.8e-23 112.8 110 52.7
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.3e-22 108.6 192 37.5
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.5e-21 107.1 86 60.5
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.5e-21 107.1 86 59.3
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.5e-21 107.1 86 59.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.0e-21 106.7 161 38.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.5e-21 105.5 86 61.6
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.5e-21 105.5 86 61.6
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 7.7e-21 104.8 97 52.6
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 7.7e-21 104.8 97 52.6
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-20 104.4 99 51.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-20 104.4 99 51.5
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.0e-20 104.4 175 37.7
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 3.8e-20 102.4 86 58.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 6.5e-20 101.7 183 37.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 8.5e-20 101.3 90 53.3
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 8.5e-20 101.3 86 57.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-19 100.9 89 56.2
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.4e-19 100.5 86 54.7
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.4e-19 100.5 201 34.3
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.2e-19 99.4 89 55.1
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.2e-19 99.4 86 54.7
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 5.5e-19 98.6 164 37.8
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 5.5e-19 98.6 200 33.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.2e-19 98.2 88 52.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 9.4e-19 97.8 97 49.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 9.4e-19 97.8 97 49.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-18 97.4 97 51.5
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-18 97.1 198 35.9
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-18 96.7 118 46.6
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-18 96.7 97 48.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-18 96.7 97 48.5
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.1e-18 96.7 97 48.5
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.1e-18 96.7 97 48.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-18 96.3 86 54.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.6e-18 95.5 86 54.7
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.6e-18 95.5 86 54.7
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 7.9e-18 94.7 197 35.0
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 7.9e-18 94.7 144 41.0
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 7.9e-18 94.7 80 57.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.0e-17 94.4 120 44.2
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-16 90.9 86 52.3
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.1e-16 90.9 80 56.2
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.3e-16 89.4 86 53.5
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.8e-15 86.3 76 53.9
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.8e-15 86.3 86 45.3
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-14 84.0 206 35.0
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.5e-13 80.5 120 40.8
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.0e-13 80.1 122 41.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.6e-13 79.7 63 57.1
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-13 79.3 82 46.3
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.9e-12 76.3 190 34.2
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-11 74.3 185 30.3
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.9e-11 73.6 53 67.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.2e-11 72.4 121 39.7
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 6.1e-10 68.6 86 43.0
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 1.4e-09 67.4 185 30.8
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 3.0e-09 66.2 188 30.9
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.0e-09 66.2 87 46.0
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 1.1e-08 64.3 188 32.4
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.0e-08 63.5 121 36.4
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 3.7e-07 59.3 199 30.7
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 4.8e-07 58.9 51 60.8
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 4.8e-07 58.9 93 40.9
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 1.8e-06 57.0 50 56.0
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 7.0e-06 55.1 44 61.4


User provided reference genes

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