Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.4e-193 679.1 458 100.0
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 2.9e-143 512.7 458 68.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 8.9e-116 421.4 463 59.4
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.7e-106 390.6 303 98.0
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 3.2e-97 359.8 462 53.7
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.4e-97 359.0 459 52.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.5e-94 350.1 461 55.3
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 3.3e-94 349.7 462 50.6
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 7.3e-94 348.6 461 51.4
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.1e-93 347.1 463 52.5
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 2.8e-93 346.7 461 60.7
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.1e-92 344.7 460 50.4
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-92 344.7 459 53.2
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 5.3e-92 342.4 469 58.8
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.3e-92 342.4 460 50.0
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.6e-91 340.1 456 49.8
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 5.8e-91 339.0 459 63.8
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.2e-90 337.0 479 55.1
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 8.4e-90 335.1 483 49.3
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.1e-88 330.5 469 63.1
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 3.5e-88 329.7 458 50.2
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.5e-86 324.3 459 48.1
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.9e-86 323.9 460 49.6
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.9e-86 323.9 460 63.7
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.3e-86 323.2 455 49.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.3e-86 322.8 463 55.3
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 4.3e-86 322.8 457 49.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.7e-85 319.7 457 49.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 3.7e-85 319.7 458 47.8
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 4.8e-85 319.3 457 48.6
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 5.3e-84 315.8 459 51.2
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 6.9e-84 315.5 460 48.9
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-83 313.9 455 48.6
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 4.5e-83 312.8 360 56.1
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 5.8e-83 312.4 458 48.3
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 7.6e-83 312.0 486 47.1
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.9e-82 310.1 455 47.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.8e-82 309.7 361 56.2
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.9e-82 309.3 456 47.6
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 8.4e-82 308.5 461 61.6
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 4.2e-81 306.2 461 47.7
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 5.5e-81 305.8 465 47.3
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.6e-80 304.3 462 47.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.5e-80 303.1 360 54.2
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 2.3e-79 300.4 462 48.1
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.0e-79 300.1 463 45.8
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.5e-78 297.0 453 47.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.3e-78 296.6 454 47.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 5.6e-78 295.8 463 46.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 2.1e-77 293.9 456 50.7
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 6.2e-77 292.4 460 46.5
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.4e-76 290.4 448 49.1
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.0e-76 289.7 449 47.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 9.0e-76 288.5 326 54.9
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.5e-75 287.7 475 59.2
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.0e-75 287.3 449 50.8
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.6e-75 287.0 449 58.6
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 5.8e-75 285.8 361 52.9
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.3e-74 284.6 461 47.1
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.3e-74 284.6 295 58.6
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.7e-74 284.3 461 58.8
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.7e-74 284.3 296 58.4
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 3.8e-74 283.1 477 44.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.9e-73 280.8 457 47.0
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.9e-73 280.8 454 46.3
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 9.3e-73 278.5 464 44.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.2e-72 278.1 459 44.9
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.1e-72 277.3 471 45.6
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 2.7e-72 276.9 276 64.9
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.0e-71 275.0 311 55.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.0e-71 275.0 459 43.8
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 5.1e-71 272.7 457 44.4
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 5.1e-71 272.7 457 44.4
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 5.1e-71 272.7 455 45.5
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.5e-70 271.2 296 57.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 2.5e-70 270.4 455 46.8
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.5e-70 270.4 460 45.7
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 7.4e-70 268.9 455 58.7
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 2.2e-69 267.3 455 45.5
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 3.7e-69 266.5 456 44.3
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 4.8e-69 266.2 460 58.3
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.1e-68 265.0 456 43.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.2e-67 261.5 366 49.5
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 6.5e-66 255.8 350 50.3
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 8.5e-66 255.4 465 47.1
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.1e-65 255.0 325 57.5
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 5.5e-65 252.7 451 43.5
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.6e-64 249.6 409 44.5
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 4.6e-64 249.6 409 44.5
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 6.1e-64 249.2 409 44.5
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.0e-63 248.4 449 41.6
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.3e-63 247.3 453 43.7
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.8e-61 240.4 181 72.9
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.9e-60 235.7 367 48.0
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 2.0e-59 234.2 444 53.2
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.5e-59 233.0 450 40.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.9e-59 232.6 358 45.5
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.5e-57 227.3 306 71.2
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 8.8e-55 218.8 466 38.2
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 7.4e-54 215.7 517 35.2
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.5e-49 200.7 469 38.0
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 7.2e-49 199.1 479 51.4
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.2e-48 198.4 315 49.8
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 8.0e-48 195.7 450 36.0
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.1e-44 183.7 457 35.2
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.6e-43 181.4 492 47.8
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 3.6e-40 170.2 228 57.5
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 9.7e-38 162.2 260 44.2
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 2.7e-32 144.1 157 49.0
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.0e-30 137.9 442 30.3
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.3e-26 125.2 275 38.2
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 7.2e-25 119.4 445 38.0
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 2.3e-23 114.4 97 67.0
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 5.2e-23 113.2 109 62.4
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 2.0e-22 111.3 356 31.7
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.6e-22 110.9 173 73.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.3e-18 97.8 160 82.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.5e-17 95.1 188 68.6
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.6e-17 93.2 156 82.1
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 7.3e-17 92.8 377 30.0
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 3.0e-10 70.9 50 72.0


User provided reference genes

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