Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 1.6e-98 362.8 189 100.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.6e-95 351.7 188 97.3
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.8e-83 312.8 173 93.6
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.7e-81 306.2 173 91.3
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 2.7e-66 255.8 163 77.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.5e-64 250.0 161 78.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.3e-64 248.8 156 79.5
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.8e-63 245.7 167 73.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 8.0e-63 244.2 171 73.7
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.2e-60 236.1 167 73.1
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.2e-60 236.1 167 73.1
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 3.7e-60 235.3 178 67.4
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.7e-60 235.3 175 68.6
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 3.7e-60 235.3 169 71.6
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 4.9e-60 235.0 157 72.6
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 6.4e-60 234.6 170 70.0
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 6.4e-60 234.6 163 68.7
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.9e-59 233.0 179 67.6
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.9e-59 233.0 164 69.5
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 3.2e-59 232.3 163 73.6
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 3.2e-59 232.3 153 74.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 3.2e-59 232.3 165 71.5
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 4.1e-59 231.9 164 69.5
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 7.0e-59 231.1 155 73.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 9.2e-59 230.7 161 70.2
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.2e-58 230.3 165 69.1
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.2e-58 230.3 153 73.2
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.6e-58 229.9 163 71.2
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.6e-58 229.9 163 71.2
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.1e-58 229.6 163 71.2
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 2.1e-58 229.6 162 72.8
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.7e-58 229.2 162 68.5
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 3.5e-58 228.8 163 70.6
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.5e-58 228.8 162 67.9
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 7.8e-58 227.6 177 62.1
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.0e-57 227.3 160 74.4
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.0e-57 227.3 159 74.8
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.3e-57 226.1 177 67.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.3e-57 226.1 164 66.5
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.0e-57 225.7 160 71.2
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.0e-57 225.7 157 72.6
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 3.0e-57 225.7 160 72.5
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.6e-57 224.2 178 69.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.5e-56 223.4 170 70.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.9e-56 223.0 164 70.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 4.3e-56 221.9 158 70.9
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.3e-56 221.1 196 61.7
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 7.3e-56 221.1 161 70.8
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.1e-55 219.5 146 74.7
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.1e-55 219.5 157 69.4
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.8e-55 219.2 158 70.3
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 3.6e-55 218.8 157 68.2
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.7e-55 218.4 165 68.5
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 4.7e-55 218.4 143 77.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 8.1e-55 217.6 152 71.7
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.4e-54 216.9 160 65.6
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.8e-54 216.5 164 68.9
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.1e-54 215.7 160 69.4
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 5.2e-54 214.9 164 67.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.2e-54 214.9 160 69.4
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 8.9e-54 214.2 155 69.0
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.5e-53 213.4 160 67.5
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.6e-53 212.6 153 71.2
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.4e-53 212.2 164 67.1
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 4.4e-53 211.8 157 66.9
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 4.4e-53 211.8 153 67.3
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 4.4e-53 211.8 155 68.4
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 9.9e-53 210.7 153 66.0
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 9.9e-53 210.7 149 70.5
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.3e-52 210.3 152 67.8
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.2e-52 209.5 150 70.7
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.9e-52 209.1 160 68.8
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 6.4e-52 208.0 136 75.0
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 6.4e-52 208.0 136 75.0
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 8.3e-52 207.6 160 66.2
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.1e-51 207.2 145 71.0
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.4e-51 206.8 155 67.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.4e-51 206.8 185 60.0
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.4e-51 204.9 146 69.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 9.2e-51 204.1 164 65.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.2e-50 203.8 131 80.2
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.6e-50 203.4 141 69.5
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.7e-50 202.6 161 67.7
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 3.5e-50 202.2 157 66.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 4.6e-50 201.8 161 67.7
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 6.0e-50 201.4 161 67.1
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 6.0e-50 201.4 161 67.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 7.8e-50 201.1 161 67.1
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.6e-49 198.0 155 65.8
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 8.6e-49 197.6 138 71.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.5e-48 196.8 132 73.5
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 3.3e-48 195.7 124 77.4
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 5.6e-48 194.9 160 64.4
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 5.6e-48 194.9 160 64.4
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.3e-48 194.5 153 64.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.2e-47 193.7 160 64.4
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.1e-47 193.0 138 70.3
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 3.6e-47 192.2 121 80.2
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 6.2e-47 191.4 137 70.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 6.2e-47 191.4 138 68.8
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.4e-45 185.7 158 60.8
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.7e-44 183.3 162 59.3
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.7e-44 183.3 137 65.7
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 7.1e-43 177.9 157 58.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 7.1e-43 177.9 136 65.4
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.7e-41 173.3 120 75.8
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 5.1e-41 171.8 102 81.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.6e-41 171.4 128 70.3
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.6e-41 171.4 105 83.8
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-40 170.2 128 70.3
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 2.5e-40 169.5 108 72.2
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 3.3e-40 169.1 103 78.6
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 4.0e-38 162.2 101 79.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 2.6e-37 159.5 128 66.4
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.6e-37 159.5 119 66.4
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.5e-34 149.1 101 75.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 6.0e-34 148.3 105 69.5
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.3e-32 142.5 117 63.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.6e-32 141.7 148 50.7
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.3e-31 140.6 110 67.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 6.2e-31 138.3 110 60.9
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.4e-30 137.1 148 48.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.0e-29 133.3 84 75.0
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.9e-28 128.6 81 75.3
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 9.3e-27 124.4 96 69.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.5e-21 107.1 156 41.7
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.2e-20 103.2 129 44.2
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.4e-19 100.5 107 53.3
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 3.2e-19 99.4 130 44.6
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.7e-18 96.3 115 46.1
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 4.3e-16 89.0 54 79.6
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 7.4e-16 88.2 57 77.2
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.6e-15 87.0 56 75.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 2.3e-09 66.6 47 66.0
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.7e-09 64.7 48 62.5
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.7e-09 64.7 48 62.5
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 3.7e-07 59.3 47 59.6


User provided reference genes

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