Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 3.2e-91 338.6 192 100.0
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 3.0e-89 332.0 192 98.4
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 3.8e-84 315.1 192 92.7
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.0e-77 292.7 192 86.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 2.1e-71 272.7 184 88.0
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 3.4e-61 238.8 189 75.7
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 4.5e-61 238.4 192 70.8
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 5.9e-61 238.0 191 72.8
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 5.0e-60 235.0 192 71.4
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 7.2e-59 231.1 203 70.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 7.2e-59 231.1 194 70.6
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 9.4e-59 230.7 192 66.1
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 7.9e-58 227.6 192 72.4
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.3e-57 226.1 192 70.3
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 3.9e-57 225.3 197 70.6
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.9e-56 223.0 195 68.2
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 7.4e-56 221.1 198 67.2
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 7.4e-56 221.1 197 69.5
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.3e-55 220.3 196 67.9
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 1.7e-55 219.9 197 69.5
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 3.7e-55 218.8 192 69.8
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.4e-54 216.1 191 70.2
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 1.5e-53 213.4 197 68.5
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.0e-53 213.0 192 65.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 4.5e-53 211.8 191 69.1
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 4.5e-53 211.8 195 68.2
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.5e-53 211.8 192 65.1
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 7.7e-53 211.1 190 68.4
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.3e-52 210.3 193 66.8
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.2e-52 209.5 192 66.1
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 2.2e-52 209.5 194 67.0
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 5.0e-52 208.4 192 66.1
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-52 207.6 191 64.9
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.1e-51 207.2 192 65.6
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.4e-51 206.8 190 66.8
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.4e-51 206.8 188 70.2
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.5e-51 206.1 192 65.6
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.2e-51 205.3 193 66.3
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.5e-51 204.9 195 64.1
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.7e-50 201.8 192 65.6
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.9e-50 201.1 192 64.6
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 7.9e-50 201.1 182 65.9
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.0e-49 200.7 195 65.1
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 1.0e-49 200.7 189 68.8
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.8e-49 199.9 194 63.9
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.8e-49 199.9 193 64.2
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 2.3e-49 199.5 194 66.0
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.9e-49 198.7 191 63.9
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.1e-49 198.4 192 65.6
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 6.7e-49 198.0 191 63.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 6.7e-49 198.0 198 64.1
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.1e-48 197.2 195 65.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 3.3e-48 195.7 193 65.8
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 3.3e-48 195.7 194 63.4
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 2.8e-47 192.6 192 63.0
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 1.1e-46 190.7 192 62.0
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.4e-46 190.3 194 63.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.8e-46 189.9 192 62.5
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 2.4e-46 189.5 191 61.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 4.1e-46 188.7 201 59.7
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 5.3e-46 188.3 188 65.4
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 5.3e-46 188.3 192 62.5
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.0e-45 186.4 191 59.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.3e-44 183.7 191 61.8
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.3e-44 183.7 196 61.2
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 2.2e-44 183.0 191 61.8
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 1.1e-43 180.6 192 62.0
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 2.5e-43 179.5 186 61.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.5e-43 179.5 191 59.7
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 5.5e-43 178.3 191 60.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.6e-42 175.6 193 60.6
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 4.7e-42 175.3 193 59.1
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 2.3e-41 172.9 191 60.2
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 2.3e-41 172.9 191 60.2
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 2.3e-41 172.9 191 60.2
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 3.9e-41 172.2 191 58.1
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.9e-41 172.2 196 60.2
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 5.2e-41 171.8 204 58.8
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.5e-40 170.2 193 58.0
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.6e-40 169.5 191 58.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 3.3e-40 169.1 193 60.1
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 4.4e-40 168.7 191 59.2
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 4.4e-40 168.7 191 59.2
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 4.4e-40 168.7 190 59.5
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 7.4e-40 167.9 191 61.3
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 9.7e-40 167.5 187 61.5
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 9.7e-40 167.5 191 58.1
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.7e-39 166.8 191 61.8
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.7e-39 166.8 189 56.6
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 2.4e-38 162.9 192 58.3
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-38 162.9 167 58.7
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 2.4e-38 162.9 190 52.1
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 3.1e-38 162.5 193 59.6
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 7.0e-38 161.4 192 57.8
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 2.0e-37 159.8 142 69.0
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 2.6e-37 159.5 193 57.5
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.9e-37 158.3 135 71.9
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 7.7e-37 157.9 193 57.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.0e-36 157.5 191 57.6
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 2.9e-36 156.0 193 56.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 5.0e-36 155.2 193 56.5
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 6.5e-36 154.8 189 55.6
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 8.5e-36 154.5 191 57.1
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 8.5e-36 154.5 191 57.1
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 8.5e-36 154.5 167 55.7
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.1e-35 154.1 185 51.4
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-35 153.7 167 55.7
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.2e-35 152.5 135 70.4
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 9.4e-35 151.0 189 47.6
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.6e-34 150.2 191 50.3
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.6e-34 150.2 184 51.6
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.2e-33 145.2 190 51.6
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-32 142.9 158 60.8
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 3.7e-31 139.0 113 61.9
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 5.3e-30 135.2 191 52.4
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.6e-29 133.7 148 58.8
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-28 131.0 154 59.1
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.9e-28 129.4 116 58.6
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-28 129.0 154 59.1
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-28 129.0 139 56.1
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-27 127.5 135 57.0
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 3.2e-27 125.9 122 55.7
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.8e-23 112.8 207 48.8
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 4.8e-23 112.1 119 63.0
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.7e-21 106.3 103 59.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.1e-18 96.7 188 46.3
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.4e-17 94.0 126 44.4
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.2e-16 90.9 135 45.9
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.2e-15 86.7 88 52.3
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 4.9e-15 85.5 105 60.0
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 8.3e-15 84.7 117 49.6
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.4e-14 83.2 131 51.1
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.5e-11 73.2 67 58.2
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 2.5e-11 73.2 179 44.1
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 1.2e-10 70.9 59 81.4
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 1.3e-07 60.8 73 47.9
CBR_g38886 Chara braunii HOM05D010919 ORTHO05D007026 9.2e-06 54.7 91 45.1


User provided reference genes

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