Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.1e-89 332.4 175 100.0
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 4.2e-82 308.1 173 93.6
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 3.9e-64 248.4 167 83.2
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 6.3e-54 214.5 175 72.6
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 1.3e-38 163.7 171 59.1
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 6.4e-38 161.4 176 56.8
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 5.4e-37 158.3 173 57.8
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 6.6e-35 151.4 177 58.8
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 6.8e-32 141.4 187 50.8
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 2.0e-31 139.8 173 53.8
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 4.4e-31 138.7 181 51.4
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 4.4e-31 138.7 178 51.1
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.3e-30 137.1 173 50.9
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.7e-30 136.7 173 53.2
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 2.2e-30 136.3 179 50.8
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.9e-30 136.0 169 52.7
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 2.9e-30 136.0 169 51.5
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 2.9e-30 136.0 174 51.7
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 4.9e-30 135.2 112 66.1
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 6.4e-30 134.8 169 52.7
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 6.4e-30 134.8 177 50.3
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 6.4e-30 134.8 181 50.8
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 2.4e-29 132.9 180 50.6
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 3.2e-29 132.5 117 63.2
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 3.2e-29 132.5 177 51.4
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 4.1e-29 132.1 174 51.1
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 5.4e-29 131.7 177 53.1
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 7.0e-29 131.3 168 50.0
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 9.2e-29 131.0 177 49.7
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 9.2e-29 131.0 170 53.5
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 1.2e-28 130.6 175 49.1
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.6e-28 130.2 176 52.3
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.0e-28 129.8 169 55.0
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 2.7e-28 129.4 178 51.1
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 4.6e-28 128.6 111 64.0
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 7.8e-28 127.9 171 50.9
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.3e-27 127.1 173 52.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 3.0e-27 125.9 130 56.9
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 3.0e-27 125.9 170 49.4
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 3.9e-27 125.6 172 51.2
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 3.9e-27 125.6 172 52.9
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 5.0e-27 125.2 183 48.1
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 5.0e-27 125.2 112 63.4
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.5e-26 123.6 103 67.0
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 1.5e-26 123.6 127 54.3
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.5e-26 123.6 111 64.9
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.5e-26 122.9 171 49.1
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 3.3e-26 122.5 181 50.3
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 3.3e-26 122.5 181 50.3
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 3.3e-26 122.5 173 51.4
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 3.3e-26 122.5 174 51.1
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 3.3e-26 122.5 183 47.5
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 4.3e-26 122.1 181 50.3
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 5.6e-26 121.7 171 50.3
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 9.5e-26 120.9 110 60.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 1.2e-25 120.6 150 55.3
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 2.8e-25 119.4 173 50.9
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 3.6e-25 119.0 175 46.3
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 6.2e-25 118.2 176 51.7
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 6.2e-25 118.2 175 51.4
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 8.1e-25 117.9 158 54.4
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 1.1e-24 117.5 173 50.3
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 1.1e-24 117.5 179 50.8
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 1.4e-24 117.1 171 51.5
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 2.3e-24 116.3 166 48.2
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 3.1e-24 115.9 167 47.3
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 3.1e-24 115.9 117 59.8
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 4.0e-24 115.5 171 48.5
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 4.0e-24 115.5 178 47.2
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 1.5e-23 113.6 118 57.6
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 2.0e-23 113.2 172 47.7
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 3.4e-23 112.5 108 63.0
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 3.4e-23 112.5 171 49.7
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 3.4e-23 112.5 181 47.5
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 4.4e-23 112.1 171 50.3
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 4.4e-23 112.1 174 47.7
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 5.8e-23 111.7 169 49.1
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 5.8e-23 111.7 172 47.1
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 5.8e-23 111.7 158 50.0
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 7.5e-23 111.3 171 49.1
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.3e-22 110.5 171 47.4
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.7e-22 110.2 155 49.7
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 4.9e-22 108.6 179 46.9
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 8.3e-22 107.8 174 44.8
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.9e-21 106.7 169 45.6
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.9e-21 106.7 97 61.9
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 2.4e-21 106.3 181 44.2
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 5.4e-21 105.1 175 45.7
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 5.4e-21 105.1 162 48.1
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 7.1e-21 104.8 185 44.9
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 7.1e-21 104.8 163 43.6
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 1.6e-20 103.6 98 64.3
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 2.7e-20 102.8 155 46.5
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 3.5e-20 102.4 168 45.2
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 6.0e-20 101.7 79 65.8
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.0e-19 100.9 97 61.9
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 5.1e-19 98.6 96 59.4
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 5.1e-19 98.6 101 61.4
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.5e-18 97.1 90 61.1
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 8.1e-17 91.3 180 39.4
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.4e-16 90.5 109 55.0
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 4.0e-16 89.0 118 46.6
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 1.2e-15 87.4 63 68.3
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 2.0e-15 86.7 154 44.8
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 2.6e-15 86.3 142 48.6
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 2.4e-13 79.7 71 67.6
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 4.6e-12 75.5 78 59.0
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 2.3e-11 73.2 175 34.9
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 5.1e-11 72.0 78 59.0
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 6.6e-11 71.6 166 39.2
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 1.5e-10 70.5 94 47.9
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 2.4e-08 63.2 98 49.0
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 2.0e-07 60.1 81 43.2


User provided reference genes

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