Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 3.1e-260 901.4 476 100.0
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.4e-236 822.8 480 91.9
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 4.6e-232 807.7 476 90.3
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 9.1e-188 660.6 475 77.3
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.4e-132 477.2 481 58.2
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 2.5e-129 466.5 490 57.8
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.2e-124 449.5 476 57.4
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 7.8e-123 444.9 481 55.7
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.7e-122 443.7 487 55.6
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 4.3e-121 439.1 452 57.1
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.2e-120 437.6 408 59.1
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 1.4e-119 434.1 488 54.7
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.7e-117 427.2 479 54.7
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 2.9e-117 426.4 520 51.9
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.4e-116 423.3 475 54.5
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 3.2e-116 422.9 481 54.7
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.6e-115 420.6 446 54.7
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.6e-115 419.1 413 57.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 4.6e-115 419.1 441 55.6
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 7.8e-115 418.3 486 51.9
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.3e-114 417.5 483 54.0
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 2.3e-114 416.8 471 53.3
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.0e-114 416.4 452 53.3
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 1.3e-112 411.0 450 54.4
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.3e-112 411.0 457 53.6
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 3.6e-112 409.5 479 53.7
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.1e-111 407.9 457 54.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.8e-111 407.1 429 55.2
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.4e-111 406.8 531 50.8
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 3.1e-111 406.4 472 52.8
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 4.0e-111 406.0 442 54.1
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.5e-110 404.1 479 50.3
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.4e-110 402.9 475 50.7
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 9.9e-110 401.4 494 51.8
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 1.7e-109 400.6 411 59.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 8.4e-109 398.3 446 53.8
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.1e-108 397.9 466 51.7
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.4e-108 397.5 406 54.2
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 5.4e-108 395.6 434 53.5
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 9.3e-108 394.8 413 55.4
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.3e-108 394.8 518 48.6
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 9.3e-108 394.8 476 50.4
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 1.6e-107 394.0 478 51.7
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 6.0e-107 392.1 412 54.9
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 7.9e-107 391.7 406 53.7
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 7.9e-107 391.7 483 52.0
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.0e-106 391.3 466 50.6
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.8e-106 390.6 477 50.7
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 5.1e-106 389.0 470 49.8
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 8.7e-106 388.3 535 46.0
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.9e-105 387.1 568 45.6
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 5.6e-105 385.6 441 51.7
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 7.4e-105 385.2 436 55.0
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.4e-105 385.2 448 52.0
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.3e-104 384.4 462 51.1
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 2.8e-104 383.3 447 52.6
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 4.8e-104 382.5 355 57.7
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.4e-103 380.2 587 43.3
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 6.9e-103 378.6 450 51.1
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.2e-102 377.9 441 51.9
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 4.5e-102 375.9 513 49.7
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 7.6e-102 375.2 421 52.5
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 6.4e-101 372.1 311 61.7
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 8.4e-101 371.7 351 57.5
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.1e-99 367.1 359 58.5
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 6.0e-99 365.5 412 51.5
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.3e-98 363.6 484 49.0
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 3.0e-98 363.2 474 50.4
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 5.1e-98 362.5 579 42.1
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-97 360.9 417 50.8
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.9e-97 360.5 474 49.2
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.9e-97 360.5 527 47.1
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 5.6e-97 359.0 433 50.1
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 7.4e-97 358.6 329 59.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 7.4e-97 358.6 421 53.4
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.8e-96 356.7 497 48.5
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 2.8e-96 356.7 475 51.4
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 4.8e-96 355.9 357 55.5
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 5.3e-95 352.4 502 47.8
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.3e-93 347.8 501 46.5
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 3.8e-93 346.3 324 57.1
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 7.1e-92 342.0 487 47.8
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 4.6e-91 339.3 413 51.6
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 6.0e-91 339.0 528 46.0
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.0e-90 338.2 507 45.6
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.1e-89 334.7 448 46.9
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 5.7e-89 332.4 470 45.5
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.4e-87 327.8 302 57.3
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.3e-82 311.2 476 44.3
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.8e-82 310.8 477 42.6
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 8.7e-82 308.5 409 46.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 2.5e-81 307.0 259 61.0
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.3e-81 306.6 453 45.7
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.6e-75 287.7 280 56.8
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.1e-75 287.3 327 54.4
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.6e-73 280.4 359 51.5
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 5.0e-69 266.2 296 50.0
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.3e-64 251.5 438 41.6
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.7e-64 251.1 337 47.8
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 8.0e-59 232.3 298 44.0
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 8.8e-58 228.8 480 36.2
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.5e-57 225.7 284 44.4
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 1.9e-52 211.1 486 34.6
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 2.5e-52 210.7 204 55.4
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.4e-52 208.8 171 64.3
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.4e-50 204.9 283 47.0
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-43 181.8 197 52.3
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 8.0e-43 179.1 166 57.8
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.1e-39 168.7 219 42.9
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 7.0e-39 166.0 122 69.7
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 2.7e-38 164.1 125 66.4
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.8e-35 154.1 130 60.0
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 3.4e-33 147.1 107 68.2
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 9.8e-33 145.6 230 37.4
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.3e-29 134.4 116 62.9
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.6e-27 128.3 175 40.0
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-27 126.7 127 58.3
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-27 126.7 127 58.3
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 8.0e-27 125.9 180 42.8
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-24 118.6 88 67.0
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.7e-24 118.2 133 50.4
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.6e-19 100.5 62 77.4
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.5e-14 84.0 77 54.5
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.0e-13 80.9 64 56.2
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 8.6e-13 79.3 96 40.6
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 1.2e-11 75.5 172 36.0
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 2.8e-11 74.3 50 70.0
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 3.1e-10 70.9 72 54.2
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.6e-09 67.8 107 38.3
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 3.2e-07 60.8 45 62.2
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 6.0e-06 56.6 147 28.6


User provided reference genes

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