Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 5.1e-238 827.4 433 100.0
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 7.9e-215 750.4 461 87.9
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 2.4e-203 712.2 444 86.9
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 6.1e-167 591.3 384 81.0
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 1.7e-156 556.6 410 70.5
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.3e-153 547.0 400 70.8
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 7.3e-152 541.2 395 69.6
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.2e-151 540.4 410 69.3
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 2.6e-149 532.7 399 68.9
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 3.4e-149 532.3 405 69.1
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 3.4e-149 532.3 410 67.3
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 7.5e-149 531.2 391 70.3
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 1.3e-148 530.4 396 68.9
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 1.3e-148 530.4 435 64.1
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 2.2e-148 529.6 409 66.7
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 3.7e-148 528.9 404 68.3
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 8.3e-148 527.7 438 64.6
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 8.3e-148 527.7 438 64.6
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 8.3e-148 527.7 405 67.7
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.2e-147 525.8 412 66.7
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 1.6e-146 523.5 408 68.1
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 3.5e-146 522.3 390 69.5
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.0e-145 519.2 438 63.5
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 1.1e-144 517.3 405 67.2
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.5e-144 516.9 455 61.3
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 4.3e-144 515.4 387 68.2
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 1.2e-143 513.8 426 63.6
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 2.1e-143 513.1 404 65.8
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.1e-142 510.8 426 63.1
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 1.4e-142 510.4 426 62.9
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 2.4e-142 509.6 402 67.2
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.4e-142 509.6 409 65.0
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 2.4e-142 509.6 397 68.0
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 6.8e-142 508.1 407 65.6
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 1.5e-141 506.9 412 65.3
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 1.5e-141 506.9 386 66.3
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 1.7e-140 503.4 398 65.8
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 4.9e-140 501.9 440 62.5
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 5.4e-139 498.4 410 64.4
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 1.2e-138 497.3 408 65.0
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 3.9e-137 492.3 392 65.8
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 3.9e-137 492.3 399 61.9
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 6.6e-137 491.5 394 66.2
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 1.1e-136 490.7 377 67.4
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 2.5e-136 489.6 404 62.1
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 9.6e-136 487.6 392 65.1
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 1.3e-135 487.3 377 66.6
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 2.1e-135 486.5 406 61.6
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 6.2e-135 485.0 424 60.6
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 6.2e-135 485.0 409 62.1
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 1.1e-134 484.2 375 66.4
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 1.5e-133 480.3 399 61.2
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 2.0e-133 479.9 371 66.6
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 7.6e-133 478.0 407 62.2
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 4.2e-131 472.2 368 65.5
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 2.7e-130 469.5 406 59.6
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.7e-129 466.8 396 61.9
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 2.5e-128 463.0 384 63.3
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 9.6e-128 461.1 400 61.0
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.1e-127 459.9 382 64.4
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 2.8e-127 459.5 394 62.4
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.5e-125 453.8 403 59.6
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 2.0e-125 453.4 407 59.2
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 1.3e-124 450.7 384 63.0
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 8.4e-124 448.0 407 58.5
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 8.4e-124 448.0 388 62.1
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 6.7e-121 438.3 398 59.0
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 3.3e-120 436.0 349 63.9
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 1.8e-118 430.3 380 61.1
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.2e-117 427.6 433 55.4
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 1.0e-116 424.5 363 60.6
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 9.6e-112 407.9 400 55.8
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 9.0e-110 401.4 382 56.0
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 5.8e-109 398.7 385 57.4
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 1.7e-108 397.1 389 56.3
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.5e-104 384.0 306 62.7
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 1.6e-103 380.6 391 53.5
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 4.8e-103 379.0 289 65.7
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 1.1e-94 351.3 264 68.2
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 1.2e-93 347.8 274 66.4
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 3.3e-80 303.1 260 61.5
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 3.7e-71 273.1 219 63.9
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 8.0e-66 255.4 399 39.8
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.1e-62 245.0 372 40.6
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 1.4e-62 244.6 408 37.5
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 4.1e-54 216.5 204 56.4
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 5.4e-54 216.1 210 56.2
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 2.7e-53 213.8 165 68.5
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 1.3e-36 158.3 162 55.6
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 3.3e-35 153.7 120 63.3
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 2.9e-31 140.6 122 59.0
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 1.4e-14 85.1 78 52.6
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 1.1e-11 75.5 70 58.6
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 4.3e-11 73.6 49 69.4
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 2.1e-10 71.2 257 25.7
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 5.3e-09 66.6 394 24.6
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 2.0e-08 64.7 417 23.3
MD02G1286500 Malus domestica HOM05D007414 ORTHO05D009482 2.6e-08 64.3 72 51.4
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 2.6e-08 64.3 417 23.3
TPR.G34603 Trifolium pratense HOM05D007414 ORTHO05D009482 5.8e-08 63.2 50 56.0
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.9e-07 60.8 392 23.7
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 2.9e-07 60.8 401 23.4
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.9e-07 60.1 390 23.3
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.9e-07 60.1 279 23.3
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 4.9e-07 60.1 392 22.4
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 6.4e-07 59.7 391 23.8
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.1e-06 58.9 385 22.1
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-06 58.5 389 22.4
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.4e-06 58.5 393 22.1
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.4e-06 58.5 396 23.7
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.4e-06 58.5 394 22.1
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-06 58.2 390 23.3
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 1.9e-06 58.2 422 22.3
Sabra03G0146300 Salix brachista HOM05D007414 ORTHO05D009482 2.4e-06 57.8 43 60.5
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.2e-06 57.4 394 22.1
PRCOL_00006348 Prasinoderma coloniale HOM05D007414 ORTHO05D333730 3.2e-06 57.4 122 34.4
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 3.2e-06 57.4 396 23.5
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.2e-06 57.0 396 23.5
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 4.2e-06 57.0 391 22.0
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 4.2e-06 57.0 406 23.2
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.5e-06 56.6 392 23.0
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 5.5e-06 56.6 393 22.4
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 5.5e-06 56.6 399 22.8
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 5.5e-06 56.6 393 21.6
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.1e-06 56.2 391 22.5
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 9.3e-06 55.8 276 26.4
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 9.3e-06 55.8 276 24.6


User provided reference genes

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