Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 3.8e-185 651.4 332 100.0
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 9.9e-157 557.0 326 88.7
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.4e-147 526.6 465 64.5
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 6.0e-114 414.8 341 71.6
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 6.7e-97 358.2 333 62.5
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 2.0e-96 356.7 267 71.5
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.1e-94 350.9 335 60.9
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 2.4e-94 349.7 308 63.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 9.1e-94 347.8 271 68.3
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-93 346.7 308 62.3
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.0e-93 346.7 266 69.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 4.5e-93 345.5 271 67.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 5.9e-93 345.1 276 65.9
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 5.0e-92 342.0 313 62.0
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.4e-91 340.5 311 60.5
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.5e-91 339.7 268 66.4
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.5e-91 339.7 276 64.9
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 5.5e-91 338.6 238 72.7
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 7.2e-91 338.2 258 68.2
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 7.2e-91 338.2 265 66.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 7.2e-91 338.2 265 66.0
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 7.2e-91 338.2 241 71.4
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 1.2e-90 337.4 281 65.1
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.7e-90 335.5 287 62.0
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 8.0e-90 334.7 239 72.4
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 8.0e-90 334.7 260 69.6
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.0e-89 334.3 321 60.1
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.0e-89 334.3 315 60.0
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.8e-89 333.6 290 62.4
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.0e-89 332.8 251 70.5
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 3.9e-89 332.4 316 61.1
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 5.2e-89 332.0 241 71.0
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 6.7e-89 331.6 267 65.9
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 8.8e-89 331.3 315 59.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 8.8e-89 331.3 241 68.5
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.5e-88 330.5 320 60.6
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.5e-88 330.5 251 70.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.5e-88 330.5 291 61.5
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 2.0e-88 330.1 321 60.1
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 3.3e-88 329.3 255 66.3
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 7.4e-88 328.2 314 59.9
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 7.4e-88 328.2 239 69.9
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 9.7e-88 327.8 296 61.5
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 9.7e-88 327.8 256 68.4
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.3e-87 327.4 255 65.1
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 3.7e-87 325.9 240 70.4
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 6.3e-87 325.1 266 64.3
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 6.3e-87 325.1 264 66.7
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.4e-86 323.9 257 67.7
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.8e-86 323.6 271 63.1
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.8e-86 323.6 252 68.3
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.4e-86 323.2 258 65.1
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.4e-86 323.2 258 67.1
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 4.1e-86 322.4 251 68.1
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 4.1e-86 322.4 258 66.7
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 4.1e-86 322.4 252 67.9
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 5.3e-86 322.0 239 71.1
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 5.3e-86 322.0 243 70.4
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 5.3e-86 322.0 254 68.5
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 3.5e-85 319.3 263 65.8
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 4.5e-85 318.9 309 57.6
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.3e-84 317.4 297 57.9
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.7e-84 317.0 238 68.1
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 2.9e-84 316.2 312 57.1
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 6.5e-84 315.1 263 63.1
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 8.5e-84 314.7 211 72.5
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 8.5e-84 314.7 250 67.2
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.1e-83 314.3 189 82.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.1e-83 314.3 264 60.6
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.9e-83 313.5 225 71.6
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 2.5e-83 313.2 255 66.3
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.2e-83 312.8 299 56.2
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 4.2e-83 312.4 249 69.1
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 7.2e-83 311.6 226 69.0
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 9.4e-83 311.2 189 82.0
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.6e-82 310.5 239 69.9
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.1e-82 310.1 236 70.8
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.6e-82 309.3 255 66.3
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 6.1e-82 308.5 192 79.2
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 1.4e-81 307.4 244 66.8
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.4e-81 307.4 252 65.5
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 6.7e-81 305.1 204 75.0
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 2.6e-80 303.1 321 56.4
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 7.5e-80 301.6 305 54.1
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.4e-78 297.4 328 52.1
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 9.1e-78 294.7 266 62.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.6e-77 293.9 243 64.2
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 2.7e-77 293.1 293 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.9e-75 287.0 281 56.6
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 3.2e-75 286.2 238 65.5
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 4.2e-75 285.8 272 57.4
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 4.0e-73 279.3 173 79.8
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 6.8e-73 278.5 173 80.3
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 4.4e-72 275.8 247 60.3
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.8e-71 272.3 288 52.4
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 2.9e-68 263.1 160 83.1
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.2e-64 251.1 261 54.8
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.5e-64 250.8 258 53.9
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 4.9e-63 245.7 220 61.8
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.2e-61 241.1 185 68.1
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.3e-59 232.6 289 48.4
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 2.3e-57 226.9 203 63.1
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 6.8e-57 225.3 200 59.0
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 8.9e-57 224.9 218 58.3
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 9.8e-56 221.5 139 78.4
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 6.6e-52 208.8 217 50.2
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 3.1e-49 199.9 269 47.2
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.4e-46 191.0 203 55.7
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 3.9e-44 183.0 153 62.7
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.6e-37 161.0 96 83.3
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-30 138.3 126 57.9
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.1e-28 129.4 121 57.0
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.8e-23 113.2 128 48.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 7.3e-19 99.0 92 62.0
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 3.6e-18 96.7 55 74.5
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 2.4e-17 94.0 52 75.0
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 5.8e-16 89.4 208 37.0
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 5.4e-14 82.8 46 76.1
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 1.0e-12 78.6 156 44.9
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 9.6e-11 72.0 43 79.1
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.9e-07 60.5 35 80.0
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.9e-06 57.8 63 54.0
Psat4g208440 Pisum sativum HOM05D006104 ORTHO05D008303 9.3e-06 55.5 32 81.2


User provided reference genes

Program Settings