Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 6.9e-130 467.2 223 100.0
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 3.6e-78 295.4 162 89.5
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.3e-64 250.4 145 85.5
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.3e-48 197.2 165 67.3
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 4.0e-21 105.9 164 40.2
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.2e-20 104.4 151 43.7
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 3.8e-19 99.4 177 39.0
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 7.1e-18 95.1 156 39.1
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.2e-17 94.4 165 37.0
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.2e-17 94.4 166 41.6
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 3.5e-17 92.8 168 36.9
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 3.5e-17 92.8 152 38.2
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 4.6e-17 92.4 145 41.4
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.3e-16 90.1 188 37.8
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.1e-15 87.8 147 40.1
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 1.5e-15 87.4 160 39.4
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.5e-15 86.7 147 39.5
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.3e-15 85.9 164 34.8
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 7.4e-15 85.1 169 35.5
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 7.4e-15 85.1 144 37.5
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.6e-14 84.0 161 36.6
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.6e-14 84.0 161 36.6
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.8e-14 83.2 140 40.0
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 3.7e-14 82.8 148 36.5
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 4.8e-14 82.4 97 46.4
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 6.2e-14 82.0 160 38.1
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 8.1e-14 81.6 146 39.0
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 8.1e-14 81.6 169 36.7
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 1.8e-13 80.5 162 37.7
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.8e-13 80.5 137 40.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.4e-13 80.1 153 35.9
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 2.4e-13 80.1 156 37.8
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 4.0e-13 79.3 97 46.4
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 4.0e-13 79.3 95 45.3
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 5.3e-13 79.0 109 45.0
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 9.0e-13 78.2 213 33.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.0e-13 78.2 159 37.1
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.2e-12 77.8 170 37.1
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 1.2e-12 77.8 167 34.7
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.5e-12 77.4 173 35.3
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 2.0e-12 77.0 168 33.3
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 2.0e-12 77.0 168 33.3
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.0e-12 77.0 113 41.6
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.6e-12 76.6 162 35.8
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 2.6e-12 76.6 162 35.8
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 2.6e-12 76.6 84 52.4
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 3.4e-12 76.3 163 34.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.4e-12 76.3 106 42.5
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 3.4e-12 76.3 110 42.7
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 4.5e-12 75.9 110 40.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.5e-12 75.9 184 31.5
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 5.8e-12 75.5 172 37.8
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.0e-11 74.7 89 46.1
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.0e-11 74.7 181 34.3
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 1.0e-11 74.7 172 36.0
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.3e-11 74.3 169 33.7
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.3e-11 74.3 162 37.7
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.3e-11 74.3 185 31.9
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.3e-11 74.3 185 31.9
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.7e-11 73.9 168 34.5
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.2e-11 73.6 171 33.3
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.2e-11 73.6 161 34.8
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 2.9e-11 73.2 111 44.1
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 3.8e-11 72.8 165 35.8
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 3.8e-11 72.8 94 46.8
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 4.9e-11 72.4 171 32.7
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 4.9e-11 72.4 171 32.7
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 4.9e-11 72.4 171 32.7
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.9e-11 72.4 101 43.6
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 4.9e-11 72.4 151 39.1
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 8.4e-11 71.6 105 42.9
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.4e-10 70.9 167 35.3
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 2.5e-10 70.1 170 30.6
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 3.2e-10 69.7 166 33.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 3.2e-10 69.7 98 44.9
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 5.5e-10 68.9 154 37.7
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 5.5e-10 68.9 162 32.7
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 7.1e-10 68.6 85 45.9
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 9.3e-10 68.2 104 44.2
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.2e-09 67.8 164 29.9
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 1.6e-09 67.4 192 33.9
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 1.6e-09 67.4 192 33.9
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.1e-09 67.0 87 41.4
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.6e-09 65.9 43 67.4
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 4.6e-09 65.9 251 27.1
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 6.0e-09 65.5 192 33.3
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 7.9e-09 65.1 101 41.6
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 7.9e-09 65.1 97 40.2
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.0e-08 64.7 99 42.4
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 1.3e-08 64.3 87 40.2
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.3e-08 63.5 98 43.9
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 2.3e-08 63.5 99 43.4
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 3.0e-08 63.2 102 44.1
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 6.7e-08 62.0 104 43.3
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 8.7e-08 61.6 154 32.5
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 4.3e-07 59.3 98 38.8
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 7.4e-07 58.5 135 34.8
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 9.6e-07 58.2 101 39.6
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 1.3e-06 57.8 115 39.1
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.3e-06 57.8 176 29.0
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 2.8e-06 56.6 102 38.2
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 6.3e-06 55.5 83 43.4


User provided reference genes

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