Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 6.4e-90 334.0 157 100.0
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.5e-65 251.1 118 95.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.5e-59 231.5 112 92.0
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.4e-51 205.3 112 75.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 1.7e-50 203.0 113 74.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 5.0e-50 201.4 116 71.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.5e-50 200.7 113 72.6
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.4e-49 199.9 116 71.6
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.9e-49 199.5 113 74.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.9e-49 199.5 143 60.8
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.9e-49 199.5 118 72.0
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.5e-49 199.1 146 62.3
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 2.5e-49 199.1 116 72.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 2.5e-49 199.1 116 72.4
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.2e-49 198.4 143 60.8
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 4.2e-49 198.4 116 72.4
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 5.5e-49 198.0 116 69.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.2e-49 197.6 116 68.1
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 7.2e-49 197.6 116 69.0
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.2e-49 197.6 128 68.0
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.6e-48 196.4 116 69.0
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.6e-48 196.4 113 73.5
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 1.6e-48 196.4 109 75.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-48 196.4 116 69.8
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.1e-48 196.1 116 72.4
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.7e-48 195.7 143 60.1
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.7e-48 195.7 133 62.4
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.6e-48 195.3 116 70.7
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.6e-48 195.3 111 74.8
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 3.6e-48 195.3 116 68.1
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 4.6e-48 194.9 116 69.0
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 4.6e-48 194.9 116 67.2
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 6.1e-48 194.5 116 68.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 6.1e-48 194.5 116 68.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 6.1e-48 194.5 113 73.5
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.1e-48 194.5 113 72.6
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 7.9e-48 194.1 116 67.2
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-47 193.7 116 68.1
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.4e-47 193.4 116 68.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.4e-47 193.4 116 70.7
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.4e-47 193.4 116 68.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.4e-47 193.4 116 67.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.8e-47 193.0 140 61.4
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.3e-47 192.6 113 70.8
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 2.3e-47 192.6 112 72.3
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.3e-47 192.6 116 69.8
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-47 192.6 116 67.2
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.3e-47 192.6 113 72.6
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 3.0e-47 192.2 129 62.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 3.0e-47 192.2 116 66.4
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.9e-47 191.8 113 72.6
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.1e-47 191.4 116 66.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.1e-47 191.4 112 70.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 6.7e-47 191.0 116 68.1
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 6.7e-47 191.0 113 71.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.7e-47 191.0 116 70.7
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 6.7e-47 191.0 116 68.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.1e-46 190.3 116 69.0
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.5e-46 189.9 116 69.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-46 189.9 116 68.1
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.5e-46 189.9 128 65.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-46 189.9 130 63.8
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.5e-46 189.9 113 70.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.5e-46 189.9 117 69.2
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 2.0e-46 189.5 116 69.0
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.0e-46 189.5 118 62.7
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-46 189.5 118 62.7
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-46 189.5 112 69.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 3.3e-46 188.7 116 69.0
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.3e-46 188.7 116 65.5
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.3e-46 188.7 113 69.9
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 3.3e-46 188.7 111 68.5
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.4e-46 188.3 113 68.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 5.7e-46 188.0 116 66.4
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 5.7e-46 188.0 116 67.2
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 5.7e-46 188.0 116 67.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.4e-46 187.6 116 65.5
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 7.4e-46 187.6 113 72.6
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 9.7e-46 187.2 111 73.0
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.3e-45 186.8 116 66.4
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-45 186.8 112 68.8
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 1.3e-45 186.8 111 69.4
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.3e-45 186.8 116 67.2
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.7e-45 186.4 111 71.2
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-45 186.4 116 69.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.2e-45 186.0 127 64.6
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.8e-45 185.7 116 66.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.8e-45 185.7 113 68.1
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-45 185.7 130 63.8
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 3.7e-45 185.3 127 63.8
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 3.7e-45 185.3 127 63.8
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 4.8e-45 184.9 133 60.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 4.8e-45 184.9 127 64.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 1.1e-44 183.7 116 67.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 1.4e-44 183.3 116 66.4
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.4e-44 183.3 133 60.2
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.8e-44 183.0 111 69.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.1e-44 181.8 116 65.5
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.3e-44 181.4 127 63.8
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 5.3e-44 181.4 116 63.8
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 6.9e-44 181.0 116 63.8
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 6.9e-44 181.0 116 64.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.9e-44 181.0 116 62.9
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 6.9e-44 181.0 112 69.6
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 6.9e-44 181.0 117 66.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 9.1e-44 180.6 116 66.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.6e-43 179.1 118 64.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.6e-43 179.1 116 65.5
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.4e-43 178.7 116 65.5
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 5.9e-43 177.9 135 60.0
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.9e-43 177.9 112 67.9
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 5.9e-43 177.9 112 67.9
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.9e-42 175.6 116 61.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 3.8e-42 175.3 116 64.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 6.5e-42 174.5 113 63.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.5e-42 174.1 112 66.1
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-41 173.7 155 53.5
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.1e-41 173.7 113 62.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.4e-41 173.3 106 67.0
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.5e-41 172.6 113 65.5
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.5e-41 172.6 102 73.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 2.5e-41 172.6 104 68.3
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.2e-41 172.2 112 67.0
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.2e-40 170.2 116 62.1
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.0e-39 167.2 106 66.0
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 1.0e-39 167.2 111 65.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.1e-38 163.7 114 63.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.0e-38 162.9 112 61.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.3e-38 162.2 116 63.8
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-37 160.2 112 59.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.8e-37 159.1 118 56.8
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.2e-37 157.5 112 60.7
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 2.4e-36 156.0 111 58.6
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-35 153.3 116 56.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-35 152.5 119 61.3
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.9e-33 146.4 119 58.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-33 145.6 116 56.9
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 8.8e-31 137.5 85 67.1
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 4.4e-30 135.2 110 58.2
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.1e-28 129.0 78 70.5
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 3.8e-26 122.1 126 46.0
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-25 120.2 78 67.9
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-24 116.7 75 65.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.4e-22 108.6 109 47.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 6.3e-21 104.8 72 66.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-19 100.5 63 66.7
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.2e-19 100.5 57 77.2
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-17 94.0 78 53.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 6.1e-16 88.2 78 52.6
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.8e-15 86.7 51 68.6


User provided reference genes

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