Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.2e-152 543.1 271 100.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.7e-141 504.6 264 96.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.2e-123 446.8 266 88.3
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 4.8e-117 424.9 265 82.3
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.0e-82 308.5 230 73.5
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 8.0e-80 301.2 290 60.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.5e-75 285.8 286 59.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.6e-72 275.8 284 61.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 8.8e-71 271.2 290 59.3
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.0e-70 270.0 303 56.4
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.5e-70 268.1 286 59.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.5e-70 268.1 286 59.1
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 7.5e-70 268.1 286 59.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 9.7e-70 267.7 276 57.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.2e-69 266.5 291 58.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.8e-68 263.5 286 57.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.2e-67 260.8 313 54.6
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 4.5e-67 258.8 304 55.9
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.7e-66 256.9 295 58.6
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.9e-66 256.1 297 55.9
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 5.0e-66 255.4 288 55.9
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 8.5e-66 254.6 251 60.6
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.5e-65 253.1 259 58.7
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 9.4e-65 251.1 291 54.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 8.0e-64 248.1 282 55.7
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.4e-62 242.7 292 54.8
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 5.7e-62 241.9 273 55.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-60 237.3 332 49.7
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-60 237.3 332 49.7
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 4.1e-60 235.7 301 51.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.6e-59 233.8 287 54.4
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.9e-59 231.9 299 53.2
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 7.7e-59 231.5 270 54.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.3e-58 229.9 296 53.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.9e-58 229.6 339 48.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.9e-58 229.6 298 54.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.1e-57 227.6 293 52.2
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-57 226.9 260 56.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.1e-56 223.4 278 54.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 2.8e-56 223.0 258 55.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.7e-56 222.2 279 52.7
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 6.1e-56 221.9 252 56.7
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 8.0e-56 221.5 269 55.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 8.0e-56 221.5 321 48.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-55 220.7 281 54.8
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.3e-55 219.9 282 55.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 5.2e-55 218.8 258 54.3
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.0e-54 216.9 252 53.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.7e-53 213.8 297 51.2
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.2e-51 207.6 323 49.8
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 3.5e-51 206.1 252 54.4
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.3e-50 204.1 272 49.6
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.8e-50 202.6 275 51.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.5e-49 199.9 242 51.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 3.6e-48 196.1 245 53.5
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.1e-48 195.3 267 52.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.0e-47 194.5 251 53.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.4e-47 194.1 331 44.4
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.4e-47 194.1 287 45.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 4.0e-47 192.6 242 54.5
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.9e-47 191.4 234 53.0
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 8.9e-47 191.4 288 49.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 2.0e-46 190.3 254 49.6
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 9.8e-46 188.0 299 47.2
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.7e-45 187.2 279 45.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 6.4e-45 185.3 244 52.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 8.3e-45 184.9 268 48.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.9e-44 183.7 288 46.5
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.4e-44 183.3 259 48.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.4e-44 183.3 284 49.3
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.1e-44 182.6 331 43.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 7.0e-44 181.8 280 45.0
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 2.3e-42 176.8 222 53.6
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-42 176.4 288 43.8
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.0e-42 176.4 288 43.8
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.9e-42 176.0 281 43.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 6.6e-42 175.3 281 44.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 8.6e-42 174.9 288 43.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.5e-41 174.1 260 48.5
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.5e-41 173.3 261 46.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.3e-41 172.6 277 44.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 4.3e-41 172.6 259 49.4
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.6e-40 170.6 234 50.4
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-40 169.9 282 43.3
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.7e-40 169.1 287 42.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.2e-40 168.7 277 44.4
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-39 167.2 280 44.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.8e-39 167.2 258 48.1
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 4.0e-39 166.0 247 48.6
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 8.9e-39 164.9 272 44.5
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.0e-38 163.7 276 45.7
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.4e-38 162.5 235 50.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 3.7e-37 159.5 212 52.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.3e-37 158.3 217 52.5
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.2e-36 156.4 215 50.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.2e-35 154.5 234 47.4
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 4.6e-35 152.5 276 41.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.0e-35 152.1 277 44.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.0e-34 151.4 255 44.3
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-34 151.0 279 41.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.9e-34 149.4 277 41.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.5e-33 146.7 278 41.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 5.6e-33 145.6 251 43.4
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.6e-32 142.9 164 55.5
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.2e-32 142.1 100 72.0
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.0e-30 137.1 284 40.8
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.0e-30 137.1 245 44.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 5.8e-30 135.6 283 41.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.8e-30 135.6 233 43.8
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.5e-30 135.2 228 40.8
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.9e-30 134.8 257 39.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 8.3e-29 131.7 286 36.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-28 131.0 284 39.1
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-28 131.0 192 48.4
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-28 131.0 204 47.5
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 4.1e-28 129.4 101 72.3
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 7.1e-28 128.6 77 79.2
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.7e-27 126.7 294 37.8
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.7e-27 126.7 231 45.5
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.0e-26 124.8 247 42.5
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.3e-26 123.6 234 41.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 5.1e-26 122.5 228 39.9
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 5.1e-26 122.5 83 72.3
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 5.6e-25 119.0 222 43.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.3e-25 118.6 159 47.2
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.6e-24 116.3 277 39.7
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.7e-24 115.9 231 39.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 4.7e-24 115.9 238 39.1
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-23 114.4 155 49.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-23 114.4 155 49.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.8e-23 114.0 242 38.4
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 8.9e-23 111.7 175 49.1
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.4e-22 109.8 229 38.9
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.3e-21 107.8 236 39.8
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.7e-21 107.5 255 39.2
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-21 107.1 228 39.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.4e-21 105.5 225 37.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.4e-20 102.4 249 38.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.6e-19 100.9 232 35.8
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.7e-19 100.1 224 39.7
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 3.0e-18 96.7 225 40.9
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.5e-17 93.6 234 37.2
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.8e-16 90.1 267 35.2
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 4.0e-15 86.3 266 33.1
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.3e-13 81.3 231 32.9
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 5.4e-12 75.9 143 42.7
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.1e-12 75.5 190 37.9
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 9.3e-12 75.1 208 36.5
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.3e-12 75.1 161 38.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.6e-11 72.8 77 51.9
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.0e-10 71.6 47 70.2
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.0e-10 71.6 47 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.3e-10 71.2 66 57.6
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.9e-10 69.7 207 34.3
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.5e-09 67.0 111 40.5
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.5e-09 67.0 92 39.1
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 1.1e-07 61.6 172 38.4
A09p05490 Brassica napus HOM05D008496 ORTHO05D010729 1.8e-07 60.8 235 27.7
BraA09t36187Z Brassica rapa HOM05D008496 ORTHO05D010729 1.8e-07 60.8 235 27.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.8e-07 60.8 143 38.5
Duzib138G1206 Durio zibethinus HOM05D001250 ORTHO05D000627 6.9e-07 58.9 103 35.0
BcaC04g23651 Brassica carinata HOM05D008496 ORTHO05D010729 2.6e-06 57.0 235 26.8
C09p05990 Brassica napus HOM05D008496 ORTHO05D010729 4.5e-06 56.2 235 26.8
BolC9t53524H Brassica oleracea HOM05D008496 ORTHO05D010729 4.5e-06 56.2 235 26.8
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 4.5e-06 56.2 122 39.3
Manes.02G069800 Manihot esculenta HOM05D001250 ORTHO05D000627 5.8e-06 55.8 97 36.1
PGSC0003DMG400014574 Solanum tuberosum HOM05D001250 ORTHO05D000627 5.8e-06 55.8 89 36.0
HanXRQChr17g0567441 Helianthus annuus HOM05D001250 ORTHO05D000627 7.6e-06 55.5 89 34.8
GSVIVG01028555001 Vitis vinifera HOM05D000333 ORTHO05D000190 9.9e-06 55.1 104 34.6


User provided reference genes

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