Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.7e-60 235.7 114 100.0
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 7.5e-48 193.7 114 83.3
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.7e-47 192.6 114 82.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.7e-47 192.6 114 82.5
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 1.1e-46 189.9 114 81.6
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.1e-46 189.9 114 81.6
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.2e-46 188.3 114 82.5
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 3.2e-46 188.3 114 82.5
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 3.2e-46 188.3 114 82.5
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 5.4e-46 187.6 114 79.8
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 9.2e-46 186.8 114 80.7
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 9.2e-46 186.8 114 81.6
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 9.2e-46 186.8 114 81.6
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.2e-45 186.4 114 79.8
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 1.2e-45 186.4 114 80.7
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.6e-45 186.0 114 80.7
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.6e-45 186.0 114 79.8
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 2.0e-45 185.7 114 81.6
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 2.0e-45 185.7 114 78.9
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-45 185.3 114 79.8
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-45 185.3 114 79.8
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 3.5e-45 184.9 114 78.9
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 4.6e-45 184.5 114 79.8
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 6.0e-45 184.1 114 78.9
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 6.0e-45 184.1 111 82.0
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.0e-45 184.1 114 78.1
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 1.1e-43 179.9 114 78.1
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 4.3e-43 177.9 114 76.3
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 9.5e-43 176.8 114 77.2
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 1.2e-42 176.4 114 75.4
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 1.2e-42 176.4 114 75.4
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 4.0e-41 171.4 114 74.6
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 4.4e-40 167.9 96 87.5
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 4.4e-40 167.9 114 73.7
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 2.9e-39 165.2 107 77.6
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 9.2e-38 160.2 114 70.2
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.6e-35 151.0 100 74.0
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 5.6e-35 151.0 101 73.3
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 7.3e-35 150.6 111 70.3
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 6.2e-34 147.5 88 81.8
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 2.3e-33 145.6 88 80.7
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 8.4e-31 137.1 84 82.1
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.2e-29 133.3 89 73.0
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.3e-28 129.0 99 68.7
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 8.6e-28 127.1 82 78.0
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 4.7e-26 121.3 75 78.7
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 4.7e-26 121.3 75 80.0
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 4.7e-26 121.3 75 80.0
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.1e-26 120.6 82 69.5
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 1.4e-22 109.8 76 76.3
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 2.3e-20 102.4 62 79.0
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 1.8e-17 92.8 71 66.2
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.3e-17 91.3 59 72.9
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.5e-16 89.7 51 84.3
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.8e-15 85.1 68 64.7
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 7.9e-13 77.4 63 63.5
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 3.9e-12 75.1 48 72.9
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.6e-11 70.5 45 77.8
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.3e-10 70.1 44 75.0
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.1e-10 69.3 68 52.9
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 3.1e-09 65.5 73 54.8
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 5.8e-08 61.2 37 75.7
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.4e-07 57.4 37 70.3
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 1.4e-06 56.6 30 83.3
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 5.5e-06 54.7 36 75.0


User provided reference genes

Program Settings